Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01916 ATGACTAGAAGATGGTCCTTTTACATGGATTTTCTACCAATTGTAGTAATTGTAAGCAATGAATTCAGTGATGTGGCTTTACTCACTTTATACAAAGCAGCCACACTTCAAGGGTTGAACAATCATGTCTTTGTTGCCTATGCTTATGTTGTTGGTACTTTTGTTCTCATTCCCATCACTTTTTTCACTAGAGGATCAAGAGTGGTTCCTCCACTCAATTTCTCCATAATATGCAAAATTGTGCTTCTTGGGGCAATAGGATCTTCATGTCAAATTATGGGTTATATTGCTATTGATTATAGTACTCCAACACTTGCTGCAGCAATTGGTAATCTAGTACCTGCTATCACTTTCATGTTAGCTGTCACTTTCAGGATGGAAAAGTTAGCTGCAAAGAGTAGAAGTAGTAATGCTAAGGTAATAGGAAGCATAATCTCAATAGCAGGTGCTTTTGTGTTGactttctacaaaggacaatcCATCATGAATTCTTCATCACTTCATCAACCAATTGATTTTCTCAAATCAGTGAATTCAAGTTGGGCTATTGCTGGCACTATGCTAATATTTGACTATTTTCTAGTTTCACTATGGTACATCTTAATGGTACATGTCTTGAAAGAGTTTCCAGATGAGCTAACTTTGGTCTTGCTTTCCAACATTACTTCCACCATCATATCTATAATTGTAGCATTGTTAGCAGTTCCAAATGCAAGTGTTTGGAAAATAGGACTAAATCTCTCACTAATCTCCATTGTTTCTTCTggaaTTTTGGGAATATTAATGGGAAGTATAGTTCATGCATGGTCATTGCGCCTAAAGGGAGCTGTCTATGTAACATCATTCAAACCATTCCAAATTGTTATTTCTGTTGTCTTGGGAGTTATATTCCTTGGTGACACTCTTCATGTTGGAAGTATAATTGGAGCCACAATAATCTCAATTGGCCTTTATGCTGTGTTGTGGGGAAAAGCAACAGAAGAAATGGAAGAAGATGTTGGTAGCTTGGAGTCACCATCAACAGAGAATGCACCTCTGTTGCAAATGATTTGCATAGCTGTTACACTATTATCGGCTATTCTTAACAAGATTATTAAGTTGAAGTTGATGAAGATGGAGAAAGCAGCAAACCAACAGAATAGAATAGCTGTCATCATCccgattcttcctcagatgaaCGGAAAACTGATTCCTCCGGTGGTTAATAACGTCATTGAGGATTCTCATATCATCAATGCCAAACAAgttGAGATTAAGCGGACTATACCAAGGGGAGCTGTTGTCTCTAAGGATTTTAGgacaaagaaaatatttgtaGGTGGTATTCCTTCAAATGTGACTGAAATTAGAGTTAGTACTTGTGTTGTGCAGGTGAGTTTAGAAATTTTCACATTCTATGGAGAAGTCAAAGATTACCAAATAATGTGGAACCACGCTACCAATCGATCTCGTGGCCTAGGGTTTGTTACCTTTGACACTAAGGAAGCTGTAGTTGATAATCTTCTATCTATGGGGAACAAGATTGAGTTTGCAAGGCACTCAGGTGAGAAATCTTTCATTCATATAACTGCATTCCATTATCTTAATTTGCTCACAACAGATATAATAGTTCATAGGATATATGCTAGGAAAATGCCATGA 1641 0.3577 MTRRWSFYMDFLPIVVIVSNEFSDVALLTLYKAATLQGLNNHVFVAYAYVVGTFVLIPITFFTRGSRVVPPLNFSIICKIVLLGAIGSSCQIMGYIAIDYSTPTLAAAIGNLVPAITFMLAVTFRMEKLAAKSRSSNAKVIGSIISIAGAFVLTFYKGQSIMNSSSLHQPIDFLKSVNSSWAIAGTMLIFDYFLVSLWYILMVHVLKEFPDELTLVLLSNITSTIISIIVALLAVPNASVWKIGLNLSLISIVSSGILGILMGSIVHAWSLRLKGAVYVTSFKPFQIVISVVLGVIFLGDTLHVGSIIGATIISIGLYAVLWGKATEEMEEDVGSLESPSTENAPLLQMICIAVTLLSAILNKIIKLKLMKMEKAANQQNRIAVIIPILPQMNGKLIPPVVNNVIEDSHIINAKQVEIKRTIPRGAVVSKDFRTKKIFVGGIPSNVTEIRVSTCVVQVSLEIFTFYGEVKDYQIMWNHATNRSRGLGFVTFDTKEAVVDNLLSMGNKIEFARHSGEKSFIHITAFHYLNLLTTDIIVHRIYARKMP 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01916 546 PANTHER WAT1-RELATED PROTEIN 5 350 - -
Tsu06g01916 546 SUPERFAMILY RNA-binding domain, RBD 415 506 IPR035979 GO:0003676
Tsu06g01916 546 SUPERFAMILY Multidrug resistance efflux transporter EmrE 228 324 - -
Tsu06g01916 546 PANTHER WAT1-RELATED PROTEIN 5 350 IPR030184 GO:0016021|GO:0022857
Tsu06g01916 546 SMART rrm1_1 436 511 IPR000504 GO:0003723
Tsu06g01916 546 Pfam EamA-like transporter family 29 154 IPR000620 GO:0016020|GO:0016021
Tsu06g01916 546 Gene3D - 431 514 IPR012677 -
Tsu06g01916 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 435 513 IPR000504 GO:0003723
Tsu06g01916 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 437 497 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01916 Tsu-Chr6 23494445 23500487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01916 1 348 Nodulin-like Gene Family AT3G28050 43.767 2.78e-97 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01916 - - mtr:MTR_6g007740 509.605