Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01915 aTGTCAGAAACTATGTATCCTAGATTGTTATTTGAACATACCCATTTGAGAATGTCTTTGATTAATCATCAAATCTATCAAAAAGATGGTTACTTTATGAATTTTCCACCACCATCATCACCAACACAATCTTCATCAagttcttcaacaacaacaccaacatcaccatcttcatcttctagtACTAAAATTAGTCCAGCTGTTCTTTTCATCATAGTTGTTCTTGCAGTTCTGTTCTTTATATCTGGTTTACTTCATTTACTTGTTAGATTTCTTATCAAGAATCCATCTTCATCTAATTCTACATCTAATAGACAACATCATAATGAAATTTCAACTTCTGATGCACTTCAAAGACAGCTACAACAGCTTTTTCATCTACATGATTCTGGTTTAGATCAAGCTTTCATTGATGCACTTCCTGTTTTTCAATTCAAGGAAATTGTTGGTTTGAATGAACCTTTTGATTGTGCTGTTTGTTTGTGTGAGTTTACTGAGAAAGATAAGTTAAGATTGTTACCTATGTGTAGCCATGCTTTTCATATAAGTTGTATAGATACTTGGCTACTTTCAAATTCAACTTGTCCTCTTTGTAGAGGAACACTTCAAACTCATGGATTTTCCATAGAAAATCCGATGTTCGATTTCGATGATATTCGAGAAGATGGTGAGTTTCCTTGTAATGGAGAGAACGGATTTGGTAATAGACAAAAAGAAATTGTCGTTGATGAAGTTGTCGATAAAGGGGTTTTGCCAGTTCGACTGGGGAAATTCAAGAAGATCAACGCGGAAGTTGGTAGAGAGAACGGAGAAGTAGGTGAAACGAGTAGTAGTAATTTGGATGCAAGAAGATGTTTTTCAATGGGATCTTATCAATATGTGGTTGGAAATTCCGAGTTAAGGGTAGCCTTAAATCATGATAGTAGAACTCATAATGATATAAGGGTTAGCAAAGGAATGGAAAATGTTAAGAATCTTTGTGTGGAGAGTGATTTGGAAGCAAAAAAGATTAGTAATGTTAGTAAAGGTGAAAGTTTTTCTATTTCTAAGATTTGGTTATGGCCGAGGAAAGGAAAATTTTCTTCGAGTACTTTAGAAGCTCATAATGGAATGGCATTGCCATCTTATCTTAACAAAGATTTGCAGCATCATGGAATGAGGGAAACAGATGgtgtatga 1179 0.3282 MSETMYPRLLFEHTHLRMSLINHQIYQKDGYFMNFPPPSSPTQSSSSSSTTTPTSPSSSSSTKISPAVLFIIVVLAVLFFISGLLHLLVRFLIKNPSSSNSTSNRQHHNEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQFKEIVGLNEPFDCAVCLCEFTEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLQTHGFSIENPMFDFDDIREDGEFPCNGENGFGNRQKEIVVDEVVDKGVLPVRLGKFKKINAEVGRENGEVGETSSSNLDARRCFSMGSYQYVVGNSELRVALNHDSRTHNDIRVSKGMENVKNLCVESDLEAKKISNVSKGESFSISKIWLWPRKGKFSSSTLEAHNGMALPSYLNKDLQHHGMRETDGV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01915 392 MobiDBLite consensus disorder prediction 36 62 - -
Tsu06g01915 392 PANTHER RING-H2 FINGER PROTEIN ATL47-RELATED 27 366 - -
Tsu06g01915 392 CDD RING-H2_PA-TM-RING 156 199 - -
Tsu06g01915 392 SUPERFAMILY RING/U-box 136 204 - -
Tsu06g01915 392 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
Tsu06g01915 392 SMART ring_2 157 198 IPR001841 -
Tsu06g01915 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 206 IPR013083 -
Tsu06g01915 392 Pfam Ring finger domain 156 199 IPR001841 -
Tsu06g01915 392 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 27 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01915 Tsu-Chr6 23484596 23486929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01915 58 359 C3H Transcription Factor Family AT2G18650 40.964 4.67e-56 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01915 - - gmx:100787206 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01915 06 23484596 23486929 Tsu06g01915 06 23484596 23486929 ECH