Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01909 ATGCATAAAATCCAAATGACTTTATGGATTTTGATTGGAGCAGCAACAATAGGAGTTATTTTGGTAGCATTTATCATTGCATACATCATTTATCTTAGATTCTTCAGATCAGCCTCATCACAAAATGAAGTGACATTTGGAAACTTGTTAAAGAAAATTTCTTGTCCAAAAATTCCTATCAAGGAAGTGTATGCTGCCACTAACCATCTCAATGAAATGAATATCATTGGGAAAGGAACTTCAGGTAAAGTCTATAAAGGTACATTGAAAAATAATCAGCAAGTTGCAGTGAAGCACATAATCAATGATGATGGAAATATACAAACTTTTGTTAGAGAAGTTACAAGTCTATCTCATATCATGCATCCAAATCTTGTTTCTTTGCTTGGTTGTTCTATTGAGGGAGAAGATTGTTTTCTAATCTATGAATTATGTCACAATGGAAGCCTTTCAGAATGGCTTTTTgGCAAGAACAAGGTGCTTTCATGGATAAAGAGGCTagaaattgcaattgatagTGCTCGAGGGCTTTGGTTTTTGCACACATATCAAGAAGGTTGTATAGTTCACCGTGACATCAAGCCAACAAATATCCTTCTAGGGTCAAAATTTGAGGCAAAACTATCAGATTTTGGATTATGTAAAGTTATTGAGATAGGTGAAACTTATGCTAGTTCAGAAGTTAGAGGAACTTTTGGATATGTGGATCCTGAGTACCAAAGCAATCACCATGTGAATTCATCTGGTGATGTTTATAGTTTTGGCATAGTACTTCTACAAATTCTTTCTGGAAAGAGGGTcataaatttgaaattgaagagaCCAATGTCACTTAGTAAAATGGCAAAAGCATTCACTAGGAATGGTAGCATTACAGAATTTGCTGATCCTAGACTTGAAGGAAATTATTGTGAAGAAGCATTTGATTATACACTTCAATTGGCTCTATCATGCACATCCCTTAACCAACAAAGACCATCCATGGAACAAGTTGTCAAAACACTAGAAGAGGCCTTATTGATTTCAAAGGGGAGGAAGATTTTTACTAAGGAAATTCTAGAAGACCTTAATATCCCTAATGGTCCATGA 1089 0.3398 MHKIQMTLWILIGAATIGVILVAFIIAYIIYLRFFRSASSQNEVTFGNLLKKISCPKIPIKEVYAATNHLNEMNIIGKGTSGKVYKGTLKNNQQVAVKHIINDDGNIQTFVREVTSLSHIMHPNLVSLLGCSIEGEDCFLIYELCHNGSLSEWLFGKNKVLSWIKRLEIAIDSARGLWFLHTYQEGCIVHRDIKPTNILLGSKFEAKLSDFGLCKVIEIGETYASSEVRGTFGYVDPEYQSNHHVNSSGDVYSFGIVLLQILSGKRVINLKLKRPMSLSKMAKAFTRNGSITEFADPRLEGNYCEEAFDYTLQLALSCTSLNQQRPSMEQVVKTLEEALLISKGRKIFTKEILEDLNIPNGP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01909 362 Gene3D Phosphorylase Kinase; domain 1 33 144 - -
Tsu06g01909 362 ProSitePatterns Protein kinases ATP-binding region signature. 76 98 IPR017441 GO:0005524
Tsu06g01909 362 Pfam Protein kinase domain 72 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01909 362 SMART serkin_6 70 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01909 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Tsu06g01909 362 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 3 346 - -
Tsu06g01909 362 SUPERFAMILY Protein kinase-like (PK-like) 53 336 IPR011009 -
Tsu06g01909 362 ProSiteProfiles Protein kinase domain profile. 70 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01909 362 Gene3D Transferase(Phosphotransferase) domain 1 145 350 - -
Tsu06g01909 362 PANTHER OS01G0253100 PROTEIN 3 346 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01909 Tsu-Chr6 23347946 23350538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01909 20 358 Receptor kinase-like Gene Family AT1G53420 36.705 4.11e-60 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Tsu06g01909 Pkinase 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01909 - - mtr:MTR_6g007690 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01909 06 23347946 23350538 Tsu06g01909 06 23347946 23350538 ECH