Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01904 ATGTTTTTGGGTATGGTGTTCTTCTTGGTCCTATTTTATGCATGCTATTACAGAAGAGGAATTTCCAAAACTGATTTGAAGAAGCTTCCATGTTATGATTATGTTGCAAGAGAAAATAGAAGTGACTCTTTGGATTGTGCAATTTGCTTGGAGAATTTCATTATTGGTGATAAGTGTAGATTGTTGCCTATTTGCAAACATAGTTTTCATACTCAATGTGTTGACAAATGGCTTTTGAAGAAACCAATTTGTCCAATTTGTAGATCTAGGGTTTCTTCACATAGAGCAAACAAAGTTGTTATAGATAATGACAATGGAGGAGAAAACATAGAAAGTGGTTCATCTAGAAATGTTGTCATAGAATTGAGAGAAAACAATCCAACATTAGAAGTGGAATCACAAGAACATTAA 411 0.3309 MFLGMVFFLVLFYACYYRRGISKTDLKKLPCYDYVARENRSDSLDCAICLENFIIGDKCRLLPICKHSFHTQCVDKWLLKKPICPICRSRVSSHRANKVVIDNDNGGENIESGSSRNVVIELRENNPTLEVESQEH 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01904 136 SUPERFAMILY RING/U-box 28 94 - -
Tsu06g01904 136 ProSiteProfiles Zinc finger RING-type profile. 46 88 IPR001841 -
Tsu06g01904 136 Pfam Ring finger domain 45 88 IPR001841 -
Tsu06g01904 136 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 18 125 - -
Tsu06g01904 136 SMART ring_2 46 87 IPR001841 -
Tsu06g01904 136 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 18 125 - -
Tsu06g01904 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 98 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01904 Tsu-Chr6 23262476 23262886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01904 19 98 C3H Transcription Factor Family AT2G17450 40.230 6.50e-19 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01904 - K15692 mtr:MTR_6g007680 197.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01904 06 23262476 23262886 Tsu06g01904 06 23262476 23262886 ECH