Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01902 ATGGCATCAGTAGCCAATGCACACTTAAAAAAGGCACATAAATTAGCTGGGAGTGTGCCTGCTGAGGCTCTTCTAGTGCTCTTGCCAGCTGTGCCTGCTCAGGTTCTCTTGGATTCCTTACGTCGGGTGCAATTTGATGTGTTTGATCCAAGGCTAGCACGAGGGGTTGAATTTGAATTATCTATAATAAACATGAACAATTTCTCACATGTTTCTCCTGGATTTCGTTTCCATCCCACTGATGAAGAACTTGTTGATCACTACCTTAGAAAAAAGATAGCTTCCAAAAGGATTGATCTTGATATCATTAAAGATGTTGATCTCTATAAAATAGACCCATGGGACCTACAAGGTATATACTCATTATTTACAATGCTAGCTCCTACACCCTCTGAtatcactattataaacaaacatAGTGACAAATAG 429 0.3823 MASVANAHLKKAHKLAGSVPAEALLVLLPAVPAQVLLDSLRRVQFDVFDPRLARGVEFELSIINMNNFSHVSPGFRFHPTDEELVDHYLRKKIASKRIDLDIIKDVDLYKIDPWDLQGIYSLFTMLAPTPSDITIINKHSDK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01902 142 Pfam No apical meristem (NAM) protein 73 117 IPR003441 GO:0003677|GO:0006355
Tsu06g01902 142 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 68 123 - -
Tsu06g01902 142 ProSiteProfiles NAC domain profile. 71 142 IPR003441 GO:0003677|GO:0006355
Tsu06g01902 142 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 68 123 - -
Tsu06g01902 142 Gene3D NAC domain 80 131 IPR036093 GO:0003677|GO:0006355
Tsu06g01902 142 SUPERFAMILY NAC domain 67 120 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01902 Tsu-Chr6 23203411 23204868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01902 65 117 NAC Transcription Factor Family AT1G12260 83.019 4.36e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu06g01902 NAM 7.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01902 - - han:110922937 109.383