Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01901 ATGATCATGGAACTCACCGATTCCACCGCCGGTAGTAACAACaacctcaacaacaacaacaacaacaacgtcCCTCCGCCGCCGCaacaaccaccaccacaaccaccgCCGCTTAACAACAACCAAGACACTCGTTCTATTTTCTGCATCGACCTAAACGAGATCCCTTCACCTTCTTCTTCATTCCCCGAAACCCTACTTGACTCAACAATCGACATCGTTCGTACCTATCACGAGAATCCCGCTCCACCTCCCGGTGGTCCTGCTGCTCTTCCTACTGGTACAACTGCTTGCGTCGTTTGTGCTAAATCCTCATCCTCCTCCGGCGGCGGTGGTAATTGTTTAGTTTGCGACGGCTGTGAGCGGAGTTTTCACTTGGCTTGTGCCGGGATTCGAGGCGGCAGTGGTCGACAGGGAGCTGCGAGTATAGGAGAGTGGGTGTGTGGTGAGTGTTTAGCTGGTGGTGTGAAGAGTAAACGATGGCCGTTGGGTGTGAAGTCGAAGCAGCTTCTTGATATCAATGCTTCACCACCTAGTGATGTTGATGGGGAGGAGTTGCATGATTCCAGAAAGGACACTATGGGTGATAAATCTCTTGGTGCCAATCAATTTGGTGCTCCAGTGACATATTCGACCTTCAACAATGGGAGTGTGTTTGGCTTCCAAAGGGCATCTGGAGCTGTGACACATGCTGTTAGAGTGGGTTATGAAGATATACTGAATCACACCCAATCAATGGCCAGAAGCTTTGCGGAGTTACCATCTCAGACTCAGAGTCCAAATGAGTTAGTTTTACGGGCTCTTAGAGATTTTATTTCTGAAAGGCATGGCATACTGGAGGATGGTTGGCGAGTGGAACTTAGACCATCAATGATCAGCTCAGACCTATATGCAGTTTATTGTGCACCCGACGGAAAGATATTTGATTCTGTGTATGAAGTAGCTAATTATCTGGGGCTACCGTCGGGCTACAATTCTATGGAATCGGAAACAAGAAATGAAATATCTCTTTCTATAGGTGGGCCTCACCTATCCAGAAAGAGGAAGTCTTCTAAGACTCTGGCAGCGAATGGTTTTGCAGAAAAGCAGGGAACCTTGGTCCATAGTAATTATAAGGACTGTTCTTATGATTTAAGTATGGAATGTGATAATGCTCAGGGGACTGTCCCAAAAGCCACTGAGATTGGAAGAAAAGAGAATGGTCACTCCGACCCTCATCAATTCGCTGATGGACTTCCTTTGCAGTTTAAGGACTTCCATGTTCTTTCTTTGGGAAAACTTGATGGCAGAccttcatattttgatgttaacCTTATCTTTCCTGTGGGCTATAAATCTTGTTGGCATGACAAGATTACGGGCTCTCTTTTTACGTGCGAAGTTTTGGATGGGGGTGATTCTGGACCTATATTTAGGATTAAAAGGTGTTCATGTTCAGAATTTCTTATTCCAGATGGGTCAATCAGCCTTTCAATTCAAAGTAATTGTCAATTTGTGAGCGAAACCAATGAAGGTCAGAGAGAGACTCATGATAGTATGGATTTAGATGGTGATGAGAGTATCCAGATACTGCTTTTAGAACCTTGTGCACCAACAGAAAACGAGATCTTGAGTTGTGTTGCCAGTTTCTCAAATGAAGCATATGCATCAGAAGGATTAAGGCCAGTTGCTGGTTCAGTTCAAGATATTACTGGAAATTCATTTGCTGATAATATGAATTTTAGTGATGAAATTGGTGAAATTTTGGTGGAAGAGCAGTCCCCATCCTCAGCATGGAGAGTTATTTCTCAAAAGTTAATCAATTCTTGCAAGGATATCTGCAAGAAGAAAGGAAGTCTTAAATTCTATTGTGAACATGTTGAGAGTGAAATGGGCTTATGGGATTTAAGGAAGGGAAAAAGTGATACCCACTTCACTTCGTTGGATAAATTTTGTGGTTCACCTGTTTCTGTCAGCATTCCAGATACAATTTATGCAGACAATGATCTGAATGGCTTGTATGAGCTGTTAGAGAAATGGTTGGAGCAGGATAGATTTGGATTAGATGCTGAATTTGTGCAAGAGTTATTGGAGATGAATCTTGGTGTGCAAGACTCTTTGCAATATGAGCTTCTGAGTAGTAGAAATAATAGTTCTTCATTGCCAACAGTGGACAATGGTTTCCTAGTGGTTGAATATAAAGGTCAATCAAAATATCAGGATGAAGAAGAAGCAGTTCAAGGTTTATATAGAAGATCTAAGAAGGCAAGATTGACTGAAAAATACGTTAAGGAAGACCGACGTCCACCTCCTGGGAAACCACTGTGCTCTAGGGCTCCTACTGAACTCATTGGTGACATTTTTCAGGTTTGGGAGCTTTTAGAGCGATTCCGTGAAATTCTAGAGCTGAAAGAACCATTGTTATTTGAGGAGCTTGAGAAGGAACTTATCAACCCATGGTTTGATGAATTAGATTTCCCTGAGAAATCTGAGAGGGGAATGGGTGGAAGTCAAGTCTTAACTTCACAAGGGGGTGATGGTGATTGCCGACTAATATGTGAAACTGGTCCATCAGATTCCACAGGAAGTTCTTTTATTCAAGTGGCAACAGAAGCAATGAAAGAGGAAGCCCAAGTTAAGCTCGCATCTTTCACCTATGTCAGATGCTTTGGTGTAGCTTTGACCAAGGCCCATAATTCATTACTAAGAGTGCTAATAGGTGAACTGCAATCAAAGGTGGCTGCTTTGGTGGATCCGAATTCTGAACCCGGAGAGACTCGGACAAGACGTGGGAGAAGGAAAGATATAGATAGTGCAGTTCCTGCTAAACGAACCAAGGTCAATATGCTTCCTATCAATGAATTGACTTGGCCAGAACTTGCTCGTAGATATATCTTGGCTTTCTTATCAATGGATGGTAACCTTGAGTCTGCGGAAATTACTGCCCGTGAAAGTGGTAAAGTATTTCGTTGCTTACGTGGTGATGGTGGTTTGCTGTGCGGTTCCCTCACTGGTGTGGCTGGGATGGAAGCTGATGCACTGTTGCTTGCGGAGGCTACAAAGAAGATTTTTGGTTCTTTGAGCAGAGAAAATGATGTACTCATCATAGAAGAAGAGGAGTCTGATACTAACGGTGCTTCTGAAATTACATTGGCAAATGATGGTAAAATTCCTGAATGGGCGCAGGTGCTGGAACCTGTCAGAAAGCTACCAACAAATGTGGGAACCCGAATCAGAAAGTGTGTTAATGATGCTCTAGAAAAGAACCCGCCAGATTGGGCAAGGAAAATACTGGTGCACTCAATTAGTAAGGAAGTGTACAAGGGCAATGCATCTGGACCAACAAAGAAAGCAGTTCTTTCAGTGTTGAAGGAGGTAACTGAAGGAGTGCAGTTGAATCCCAACAAgggaatgaaaaagaagattgtTATATCTATTTCCGACATAATTATGAAACAATGCCGCATTGTACTACGTCGTGCAGCTGCTGCAGACGATTCAAAAGTTTTTTGCAATTTGTTGggaagaaaattaataaattcttctgataatgatgatgaggggCTTCTTGGAACTCCAGCTATGGTGGCCCGCCCTCTTGACTTCCGGACTATTGACCTAAGGTTGGCTTCTGGAGCATATGGTGGATCTTGTGAAGCTTTTCTCGAGGATGTACGTGAGCTCTGGAGCAATGTTCGTGTTGCTTTTGCGGATCAACCTGATTTAGTTGAACTGTCAGAAAAATTATCCcagaattttgaatttttatacaaCAAGGAGGTTCTCACTTATGTTGAAAAGTTCACTGATTATGCTAAAGCAGGATGCATCAGTGATCAAATGAAAAAAGATATTGATGATTTCATTGCATCAACAAGTCAGATTCCAAAGGCCCCTTGGGATGAGGGGGTTTGCAAAGTATGCGGAATTGACAGGGATGATGACAGTGTTCTACTGTGCGACAAATGTGATGCTGAGTATCATAAATATTGCTTGATTCCTCCACTTGCAAGGATCCCTGAAGGAAACTGGTACTGTCCATCTTGTATTGGTGGTAAACCTGCAACTCAAGATGTCATAGAACGTGCACAGATTACTGGAAAACGTAGAAGTAAAAAATTCCAGGGAGAAATTAATTGTCTTTACTTGGAAGCACTAACTCATTTATCAGCtgtaattgaagaaaaagaatattgGGAGTACAGCGTGGGAGAGAGAACGCTTCTTCTCAAGTTTTTGTGTGATGAGTTGCTCAATTCTTCCCTGATACGACAGCATCTTGAGCAGTGTGCAGAGTTGTCTGTTGAGTTGCATCAGAAATTGCGTGCACTTTCTGTAGAGTGGAAAAGCCTGAAAATTAAGGAAGATGTTTTATCCACAAAAGCTGCAAAATTTGACACATTGTCTCAAATTACCACCGGGGAATTTGGTGTTAAGGAAGGGTTCCCATCTTTGTTCTCAAATACTAGTAAATGTCTGGTTAAGCCACATACTACAACCACTAATCATAGTGGTCCTGGGGCATTTGTTGACAGTCTACCTTCAGAAGAGATTCCCAAAGTGAAGTGTAGGCTCAACAGTGTTGATAAAAGCATATCTGTGACACATTCAGATTCTGATAACCAACATATGAATTCTATAGAAGGACAACATAGGACTGTTCCTGTGGCTGTTGAGTCTCAATGTACAGATAAATCCCTCAAGTCTTTTCCATCGTCAAATCATATGCCTCAAGAAATTAATGGCTACAGTGGAGCAACTCATATTCAGGGTAACTACCAGAAATGTGAGGCAAGGGATGTATCTACTTGTGTGACATACCAGCAAGGACAATGTGTGCCTGTTGAAGTTTCCCAAAATGCTGTGAATGAGTCGGAAACATACCACCTTGAGCTCAATGCCGTCAAGCGTAATATTTCACTGCTGCAGGATTCTATAAATAGTGTAGGATCACAGCTTCTGAAGCTCTCTGTTCGCCGGGATTTTTTGGGTATTGATTCCATTGGTCGACTGTACTGGGCTTTGGCTACACCCAGAGGACGTTCACGTATAGTTGTTGATGCAAGTGCTGTTCTTCATCACGGCAGAGGATCGTCAGTTAGCAAAGATTGTGCAGAGAAGTTTTCTGCTCTGCAGCATTGTGCATTATTTGAGAAGGATAACTATAAGATGTTAGGGCTGATCAAGGATTCCTCTCCTTTAATGTCCCAACCACTTAATGCTTTAGGCAGTAGTTCACCGTGGATTGTTTATGAAACAGATTCAGAAATTGAAGAGCTATTGGGTTGGTTAAAAGATTGTGACCCTAAAGAAAAAGAGCTGAGAGATTCAATTATGCTGGGGCCAAAATATAGACCTCAAGAGTTTATTAATGCACACACTGAAGGTCAGGTTGAGGACCAAGGACCTGTTTATTTGCCAAGAAATACAGTATCTAACTCTCTTGTTACAAAGGCCACTTCTTTGCTGGAAAAGAATTATGGTCCCTTCTTTGAGTTGGATACTGCTGAGGTGTTGAAGAAGCAGATTAAAAAGGCCAGAATAATTAATGATGAAAAGTTGTATAGGTGTGAGTGCCTAGAACCCATATGGTCTTCTAGGAAACATTGCCTGTATTGCCACAAAACCTTTTTAAGTgatgttgagtttgagggacACAATGATGGAAAATGTCATGCAGGACTTATGGCCTTGGAGaggaataaagaaaaaaatggatcTTCTAAAGGCAGAGGGAACTTGAAATGTGATGCCTCACATGAAAAATCTAGAGCTGATGCAGAGACAGATGGAACCTCAATTAATAGATGTTCCAAGCTAAGTTCGAGATTGATCAagttttcaaatgaaaattccTCTTGCCCATTTAAGTTTGAAGATATATGCTCAAAATTTGTGACAAATGATTCCAACAAGGAAGTTGTCAGAGAAATTGGTCTTATTGGTTCAGATGGTGTCCCATCCTTTGTGCCTTCCATATCTCCTTTTGTTAGTGATTATACACCATTCTTAACCCTAAAGGATGGTAGCATTGTTGGTGGTGCTTCTAAAGCTTCAGAAAGCCGGGTTTCGCAGGAAAAAACGGACGGATCTGGCATATGCCATGACCATAACTCAGGCAAATATGCTGAAAGTTTAGCCACAAATGAAAGCAATGAAGCAGGGAAATCTAACAAATCATCTTTGGGAGAACAGAGAGATGGAAAATTTCTCCATTACCGGGCATTCAGCCATTTCAAAGCACATCTGACACATCTCATTCCTTAG 6246 0.4071 MIMELTDSTAGSNNNLNNNNNNNVPPPPQQPPPQPPPLNNNQDTRSIFCIDLNEIPSPSSSFPETLLDSTIDIVRTYHENPAPPPGGPAALPTGTTACVVCAKSSSSSGGGGNCLVCDGCERSFHLACAGIRGGSGRQGAASIGEWVCGECLAGGVKSKRWPLGVKSKQLLDINASPPSDVDGEELHDSRKDTMGDKSLGANQFGAPVTYSTFNNGSVFGFQRASGAVTHAVRVGYEDILNHTQSMARSFAELPSQTQSPNELVLRALRDFISERHGILEDGWRVELRPSMISSDLYAVYCAPDGKIFDSVYEVANYLGLPSGYNSMESETRNEISLSIGGPHLSRKRKSSKTLAANGFAEKQGTLVHSNYKDCSYDLSMECDNAQGTVPKATEIGRKENGHSDPHQFADGLPLQFKDFHVLSLGKLDGRPSYFDVNLIFPVGYKSCWHDKITGSLFTCEVLDGGDSGPIFRIKRCSCSEFLIPDGSISLSIQSNCQFVSETNEGQRETHDSMDLDGDESIQILLLEPCAPTENEILSCVASFSNEAYASEGLRPVAGSVQDITGNSFADNMNFSDEIGEILVEEQSPSSAWRVISQKLINSCKDICKKKGSLKFYCEHVESEMGLWDLRKGKSDTHFTSLDKFCGSPVSVSIPDTIYADNDLNGLYELLEKWLEQDRFGLDAEFVQELLEMNLGVQDSLQYELLSSRNNSSSLPTVDNGFLVVEYKGQSKYQDEEEAVQGLYRRSKKARLTEKYVKEDRRPPPGKPLCSRAPTELIGDIFQVWELLERFREILELKEPLLFEELEKELINPWFDELDFPEKSERGMGGSQVLTSQGGDGDCRLICETGPSDSTGSSFIQVATEAMKEEAQVKLASFTYVRCFGVALTKAHNSLLRVLIGELQSKVAALVDPNSEPGETRTRRGRRKDIDSAVPAKRTKVNMLPINELTWPELARRYILAFLSMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSLSRENDVLIIEEEESDTNGASEITLANDGKIPEWAQVLEPVRKLPTNVGTRIRKCVNDALEKNPPDWARKILVHSISKEVYKGNASGPTKKAVLSVLKEVTEGVQLNPNKGMKKKIVISISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGTPAMVARPLDFRTIDLRLASGAYGGSCEAFLEDVRELWSNVRVAFADQPDLVELSEKLSQNFEFLYNKEVLTYVEKFTDYAKAGCISDQMKKDIDDFIASTSQIPKAPWDEGVCKVCGIDRDDDSVLLCDKCDAEYHKYCLIPPLARIPEGNWYCPSCIGGKPATQDVIERAQITGKRRSKKFQGEINCLYLEALTHLSAVIEEKEYWEYSVGERTLLLKFLCDELLNSSLIRQHLEQCAELSVELHQKLRALSVEWKSLKIKEDVLSTKAAKFDTLSQITTGEFGVKEGFPSLFSNTSKCLVKPHTTTTNHSGPGAFVDSLPSEEIPKVKCRLNSVDKSISVTHSDSDNQHMNSIEGQHRTVPVAVESQCTDKSLKSFPSSNHMPQEINGYSGATHIQGNYQKCEARDVSTCVTYQQGQCVPVEVSQNAVNESETYHLELNAVKRNISLLQDSINSVGSQLLKLSVRRDFLGIDSIGRLYWALATPRGRSRIVVDASAVLHHGRGSSVSKDCAEKFSALQHCALFEKDNYKMLGLIKDSSPLMSQPLNALGSSSPWIVYETDSEIEELLGWLKDCDPKEKELRDSIMLGPKYRPQEFINAHTEGQVEDQGPVYLPRNTVSNSLVTKATSLLEKNYGPFFELDTAEVLKKQIKKARIINDEKLYRCECLEPIWSSRKHCLYCHKTFLSDVEFEGHNDGKCHAGLMALERNKEKNGSSKGRGNLKCDASHEKSRADAETDGTSINRCSKLSSRLIKFSNENSSCPFKFEDICSKFVTNDSNKEVVREIGLIGSDGVPSFVPSISPFVSDYTPFLTLKDGSIVGGASKASESRVSQEKTDGSGICHDHNSGKYAESLATNESNEAGKSNKSSLGEQRDGKFLHYRAFSHFKAHLTHLIP 2081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01901 2081 MobiDBLite consensus disorder prediction 174 196 - -
Tsu06g01901 2081 Pfam Bromodomain 1186 1239 IPR001487 GO:0005515
Tsu06g01901 2081 SUPERFAMILY Bromodomain 1132 1252 IPR036427 GO:0005515
Tsu06g01901 2081 Gene3D - 1140 1261 IPR036427 GO:0005515
Tsu06g01901 2081 MobiDBLite consensus disorder prediction 1 23 - -
Tsu06g01901 2081 CDD PHD_SF 98 151 - -
Tsu06g01901 2081 MobiDBLite consensus disorder prediction 2008 2031 - -
Tsu06g01901 2081 CDD PHD1_Lid2p_like 1297 1342 - -
Tsu06g01901 2081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 155 IPR013083 -
Tsu06g01901 2081 ProSitePatterns Zinc finger C2H2 type domain signature. 1863 1885 IPR013087 -
Tsu06g01901 2081 Pfam Methyl-CpG binding domain 270 321 IPR001739 GO:0003677
Tsu06g01901 2081 ProSiteProfiles FYR domain FYRN motif profile. 411 464 IPR003888 GO:0005634
Tsu06g01901 2081 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1377 1421 IPR028942 -
Tsu06g01901 2081 SMART PHD_3 1297 1343 IPR001965 -
Tsu06g01901 2081 SMART PHD_3 97 152 IPR001965 -
Tsu06g01901 2081 MobiDBLite consensus disorder prediction 1895 1921 - -
Tsu06g01901 2081 Pfam PHD-finger 98 152 IPR019787 -
Tsu06g01901 2081 Pfam PHD-finger 1297 1343 IPR019787 -
Tsu06g01901 2081 CDD Bromodomain 1189 1250 - -
Tsu06g01901 2081 MobiDBLite consensus disorder prediction 181 195 - -
Tsu06g01901 2081 ProSitePatterns Zinc finger PHD-type signature. 1298 1342 IPR019786 -
Tsu06g01901 2081 ProSiteProfiles Zinc finger PHD-type profile. 1295 1345 IPR019787 -
Tsu06g01901 2081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1283 1366 IPR013083 -
Tsu06g01901 2081 SUPERFAMILY FYVE/PHD zinc finger 96 162 IPR011011 -
Tsu06g01901 2081 ProSiteProfiles Bromodomain profile. 1188 1236 IPR001487 GO:0005515
Tsu06g01901 2081 Gene3D - 412 521 - -
Tsu06g01901 2081 PANTHER OS02G0192300 PROTEIN 44 2080 - -
Tsu06g01901 2081 MobiDBLite consensus disorder prediction 24 39 - -
Tsu06g01901 2081 SUPERFAMILY FYVE/PHD zinc finger 1286 1346 IPR011011 -
Tsu06g01901 2081 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 44 2080 - -
Tsu06g01901 2081 ProSitePatterns Zinc finger PHD-type signature. 98 151 IPR019786 -
Tsu06g01901 2081 MobiDBLite consensus disorder prediction 1 44 - -
Tsu06g01901 2081 ProSiteProfiles Zinc finger PHD-type profile. 95 154 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01901 42 2009 C2H2 Transcription Factor Family AT3G01460 44.384 0.0 1503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu06g01901 Bromodomain 0.00012 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01901 K22768 - gmx:100820223 2789.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01901 06 23189713 23201293 Tsu06g01901 06 23189713 23201293 ECH