Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01899 ATGGAGTCTGGTCGTCTTTACTTTGATAGTTCTAGTTGTCGTGGTAACAACAACATGAATATGCTCTTTCTTGGGAATGCTGATCTTGGTTTTCGAGTAGGAAGGTCAATGATGAGCATGGAGGAAGGCTCAAAAAGGAGACCTTTCTTCAGCTCCCCGGATGAACTGTATGATGAGGAGTATTACGAGGAACAGTCACCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTCCATCTGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTTGAGCCAGAGAGGAAGACTCAATTGGCCAAGAAGCTAGGGTTGCAGCCTAGACAGGTGGCTGTATGGTTTCAGAACCGTAGGGCTAGATGGAAGACAAAACAACTTGAAAGAGATTATGATGTTCTTAAATCTTCCTATGATTCCCTACTTTCAACATATGATTCCATTATGAAGGAGAATGAGAAACTCAAATCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCCAGCTAAAGATATGCCTGAAGAACCTTTATTGTCAGAAAAGAAAGCTGAACCACTTCAAGTGGACATAGCTCAAATATTCAGCATAAAGGTGGATGACCACATGAGTTCTGGAAGTGTTGGAAGTGCGGTGGTGGACGAGGGTAGTCCTCATGTCGTTGTTGACAGTGTTGATTCATACTTTCCAACTGACAACTATGGTGGATGTGTGGCTCCTATTGAAAGAGTTCAATCAGAGGAAGATGATGGAAGTGATGATGGGAGGTGTTACTTTGATGTGTTTGTTGCATCTGAAACAACTCAGCAACAAAACCATGAAGGAGGAGAAGGATTGAATTGGTGGGGTAATATGTATTATGTTGCATGA 867 0.4302 MESGRLYFDSSSCRGNNNMNMLFLGNADLGFRVGRSMMSMEEGSKRRPFFSSPDELYDEEYYEEQSPEKKRRLTSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSIMKENEKLKSEVVSLNEKLQVPAKDMPEEPLLSEKKAEPLQVDIAQIFSIKVDDHMSSGSVGSAVVDEGSPHVVVDSVDSYFPTDNYGGCVAPIERVQSEEDDGSDDGRCYFDVFVASETTQQQNHEGGEGLNWWGNMYYVA 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01899 288 Coils Coil 137 164 - -
Tsu06g01899 288 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677
Tsu06g01899 288 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677
Tsu06g01899 288 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 260 - -
Tsu06g01899 288 SMART HOX_1 67 128 IPR001356 GO:0003677
Tsu06g01899 288 SUPERFAMILY Homeodomain-like 58 126 IPR009057 -
Tsu06g01899 288 Pfam Homeodomain 69 122 IPR001356 GO:0003677
Tsu06g01899 288 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 260 IPR045224 GO:0003700
Tsu06g01899 288 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Tsu06g01899 288 CDD homeodomain 69 125 IPR001356 GO:0003677
Tsu06g01899 288 Gene3D - 62 131 - -
Tsu06g01899 288 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Tsu06g01899 288 Pfam Homeobox associated leucine zipper 124 166 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01899 Tsu-Chr6 23184501 23187815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01899 1 282 Homeobox Transcription Factor Family AT3G01470 58.392 5.80e-99 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu06g01899 Homeodomain 4.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01899 K09338 - gmx:100797836 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01899 06 23184501 23187815 Tsu06g01899 06 23184501 23187815 ECH