Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01877 ATGGAAAGCATTATTACAGGGATGGGACCTAATGAAAGTGATGAACCAACTTTTGATACCACACAAGATGCTCCTATAACACAAACAGATCAAGTAATCCCTATGGATTGTGATGAAAAAATAAAGCCTAAAGTAGGACAATTGTTTGATACATTAGAAGATGCTGAAAGTTTTTACAAAAACTATGCACACAGTGTTGGCTTTAGCGTGCGTTGCTCgtcagaaaataaaaataaaaatggtgtcAAGCGTTGGAAATATTTTGTTTGCTCAAAGGAAGGTTACAAACCAAATGAAGCAAAAGATGGTGAAGGAGAACAAACTCAAACACTAATTAAAACTAAGAGGAGGAGTCTTACTAGAGAAGGTGCCCAACGAAGAAAAATGCAGGTGCCCAAGCATTAA 405 0.3481 MESIITGMGPNESDEPTFDTTQDAPITQTDQVIPMDCDEKIKPKVGQLFDTLEDAESFYKNYAHSVGFSVRCSSENKNKNGVKRWKYFVCSKEGYKPNEAKDGEGEQTQTLIKTKRRSLTREGAQRRKMQVPKH 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01877 134 MobiDBLite consensus disorder prediction 96 134 - -
Tsu06g01877 134 MobiDBLite consensus disorder prediction 13 29 - -
Tsu06g01877 134 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 22 131 - -
Tsu06g01877 134 MobiDBLite consensus disorder prediction 1 29 - -
Tsu06g01877 134 Pfam FAR1 DNA-binding domain 57 114 IPR004330 -
Tsu06g01877 134 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 22 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01877 Tsu-Chr6 22931518 22932014 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu06g01877 FAR1 4e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01877 - - lja:Lj0g3v0232569.1 130.954