Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01833 ATGTCAACTTCTAGAACCTCAAACACTTCCCTTAAAGGACATAATCATCAACACAATCAAACTCAAATTAATCTATCTCTTCTTAAACGAAACACGTCGGTTTGTAGCGAAAAAAGAGGGagaagaaaacaaacagaaCCAGGTAAGTTTCTTGGTGTAAGGAGAAGACCTTGGGGTAGATATGCAGCTGAAATTAGAGATCCTAGTACTAAAGAAAGACATTGGCTTGGAACATTTGATACTGCTGAAGAAGCTGCTTTTGCTTATGATAAAGCTGCTCTTTCCATCAATGGTAGCAATGCTAgaacaaatttcatctattctTCTGAATCTGATGAAACCAATCTTCACAATGATGTTACATCTTTAGATGTTCAAAAAACACAACCAACCAATCAAATTGAAGAACAACATTCTTCtcatttgaacaatttgaacAATGAAAATCTGTTCTTCTCTAATGATTATAATAACTCAGGATATCTTGAATGCATTGTTCCtgttaattgtttcaaaccAATTTCCAACAACAATTCAAACTTTGATCATAATAGCAATACAAATGGTTCAAGTGAACATCAAAATGTTGTTGATTCCATTAGCACAACAAATTACTTCATGCAGGATCAATCATTTTATGATCACTACACTCCATTCTCTCAAGAATCAATTAACATTGACACAAGTGAAAGTAGTGAAGGATTATCATGGGATTGCAATTACAATGAACTTTCAGCTATTTTTAACAAACCATTAAGCAGTGAAAGTTCAAGCTATGGACTAATGACAACTCATGATGTTTCTTCAACTACCTATTCTTCTCCATCGTACTCTTCTTTCGGCCATGTTGACATGGGATACTCACTCTTCTTAGGACAACGATCCTCAGAAGACAGCAGTTGCGGAGACCGTTAG 915 0.329 MSTSRTSNTSLKGHNHQHNQTQINLSLLKRNTSVCSEKRGRRKQTEPGKFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAFAYDKAALSINGSNARTNFIYSSESDETNLHNDVTSLDVQKTQPTNQIEEQHSSHLNNLNNENLFFSNDYNNSGYLECIVPVNCFKPISNNNSNFDHNSNTNGSSEHQNVVDSISTTNYFMQDQSFYDHYTPFSQESINIDTSESSEGLSWDCNYNELSAIFNKPLSSESSSYGLMTTHDVSSTTYSSPSYSSFGHVDMGYSLFLGQRSSEDSSCGDR 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01833 304 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 290 - -
Tsu06g01833 304 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Tsu06g01833 304 Pfam AP2 domain 50 98 IPR001471 GO:0003700|GO:0006355
Tsu06g01833 304 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Tsu06g01833 304 CDD AP2 49 105 IPR001471 GO:0003700|GO:0006355
Tsu06g01833 304 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Tsu06g01833 304 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Tsu06g01833 304 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 290 - -
Tsu06g01833 304 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Tsu06g01833 304 MobiDBLite consensus disorder prediction 1 23 - -
Tsu06g01833 304 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01833 Tsu-Chr6 21834962 21835876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01833 1 122 AP2-EREBP Transcription Factor Family AT5G18560 56.934 4.19e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu06g01833 AP2 1.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01833 - - mtr:MTR_2g019750 412.535