Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01832 ATGATGGCTAAAAAGAGATTGTTGAGAGAATATGATGGAGAAAATGATCGTAGTCTATCTCCACCCTTACGTCATGATAAATGGAAGAGGGCACGACAAACAAAAGAGGGAGAGTACACATCAACGGCTACACAAGTTGTTGCCGAGAAAATTGATTCTCTAGTTGAAGAGACGAAAAAGGGCACCTTTGTTCCAAAAGGACGTGATGATATTCTAACAAATGCCCTTGGAACATCTGAGCATGGTGGCCGTGTTCGTGGTGCTGGACGAGGTGCTACTATTAGCAATTTCTTTGGAAGGTCTTCACGTTCAACACCAAATATAAATGTCACCGAGCAGTTGTCACAACTAGAAACAAAACTTAAAGCTGATTTTGAAGAGAAGTTGGTTGTAGAGCGTCAATTGATGCAACAATCATTTATGGAGACACTTAAGTCTATCGGTTTCTCTCCAACTGCCTCCCAAATAAAGCAAGTGGTTGAGGAGTGTTCTCCAAAAGATATTGTGAATGGAAGTGTGAAAGCTAGTTGTTCTGTTGCACCAGCAAACATTAAGGAGGACTCTGATTATGACGCAGACTCAGTTCAAAAATTGTTAAGCATGAttgtgaaaaggaaaaaatatttgcGCATACAATTAGAACATGATGCGTGTGTCACCAATTTTAAGATGTCGCCAAAGTATATGAAAGACTTATTGGTGGGTGATAATTGGCTTGACTTATCAATTCTACAGATTTGGTGCACGTATATGCATCGTTTTTCCATGGAAACAGAAAACTCAGATTTGTATGCATTTTTGGACCCATGTCAATTGAATTTTGCAACAAAGCCACTCTCAATTCAAAAGGCGGGTAAACAATACATACAAAATAAGTTGCGTGATCTAAAGAAAGAGTGCTTCTTAGCGCCACATCTTTCATCtGCTTTCACGGTTCATCAATTAGCTTGTGGTAATAGAAAGACGCCTATCTGGATTTATCCCAAAGTGTTCAATGATCCTACAGCATTAACAGACGAGGAGCTGTATGATTTGCGAAACCGCTGGGCAACTTGTTTTCGTGATCTATATAACCCTGAGATTGATTTTGACGATAGTGGAGAGTATCCCGAACGCGCTGGCCAGCCGGTTTGCCAGTATTATATGAGAACAAGATCTTGCAAATTTGGTGCGTCTTGCAAGTACCATCATCCTAGACAGGCTGGAGCAACTGATGCTACTCCTGTTTCACTAAATTATTATGGATATCCGTTACGTCCGGGTGAAAAGGAATGTTCCTATTTTGTGAAAACGGGACAGTGCAAATTTGGTGCTACTTGTAAATTTGATCATCCAGTTCCTGCTAGTGTTCAAATTCCAACTCCATCGCCGGTTCCGCCAGTTTCACCTTTACATGTACAAGTGCCTTCGCCGTTATATCCAACAGTACAGCCTCCATCTGGTCCTTCTTCACAACAAATTGGTGTACTGGTTGCAAGGCCGCCTCTACTACCTGGTTCGTATGTCCAGGGCCCCTACGGACCTATGGTATTGTCCCCAACCATGGTTCCATTTTCTGGCTGGGGTCCTTATCAGGCCACTGCAACAAGCCCTGTACTTCCTTCTGGTTCTCCGGCTAATGTTGGTTCCACACAGCTTTACGGGATAACTCACATACCTTCATCAGGTAATGCCTATAGTGGACCTTATCAACCTTCTGTTTCCTCGGTTGGTCCTTCAAGCAGAAATCCGAAGGATCAGTCATTTCAAGCAAGGCCTAATCAACCAGAATATCATTACTACACTAAACCAGAAGAGCTTCCATTTGGTCCATCATATAGCTATCACCAACCACCAGACACGAGTGCACCAAAAGCAAATGTTGTCCTTAGTCCTTCAGGTCTTCCGTTACGCCCGGGAGCAGCACTTTGCACTCATTTCGCACAGCGTGATGCGCCAGTTGCACCCTACTTCGTCGCTTCATCTGTTGGTACTCTTgctccttcatcttcttcaccagaGTTGCAGTCCGAACCTACCGCAGGATCCAGCAGGGAGTCTGTTCCATCCAGAATATCTTCATCAGTAAGCATATCGACCGGATCAGTTGGCTTGCCTTTGTCAACTAGTGGACCTGTTTCTCAATCAAGCACTCGGAGTTCCAGTCCTTTAGCACCTGCCAGTACGACAACAAGTAACAATGTCTCTCACACCTCAAGCTAA 2202 0.4278 MMAKKRLLREYDGENDRSLSPPLRHDKWKRARQTKEGEYTSTATQVVAEKIDSLVEETKKGTFVPKGRDDILTNALGTSEHGGRVRGAGRGATISNFFGRSSRSTPNINVTEQLSQLETKLKADFEEKLVVERQLMQQSFMETLKSIGFSPTASQIKQVVEECSPKDIVNGSVKASCSVAPANIKEDSDYDADSVQKLLSMIVKRKKYLRIQLEHDACVTNFKMSPKYMKDLLVGDNWLDLSILQIWCTYMHRFSMETENSDLYAFLDPCQLNFATKPLSIQKAGKQYIQNKLRDLKKECFLAPHLSSAFTVHQLACGNRKTPIWIYPKVFNDPTALTDEELYDLRNRWATCFRDLYNPEIDFDDSGEYPERAGQPVCQYYMRTRSCKFGASCKYHHPRQAGATDATPVSLNYYGYPLRPGEKECSYFVKTGQCKFGATCKFDHPVPASVQIPTPSPVPPVSPLHVQVPSPLYPTVQPPSGPSSQQIGVLVARPPLLPGSYVQGPYGPMVLSPTMVPFSGWGPYQATATSPVLPSGSPANVGSTQLYGITHIPSSGNAYSGPYQPSVSSVGPSSRNPKDQSFQARPNQPEYHYYTKPEELPFGPSYSYHQPPDTSAPKANVVLSPSGLPLRPGAALCTHFAQRDAPVAPYFVASSVGTLAPSSSSPELQSEPTAGSSRESVPSRISSSVSISTGSVGLPLSTSGPVSQSSTRSSSPLAPASTTTSNNVSHTSS 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01832 733 ProSiteProfiles Zinc finger C3H1-type profile. 372 400 IPR000571 GO:0046872
Tsu06g01832 733 MobiDBLite consensus disorder prediction 558 588 - -
Tsu06g01832 733 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 421 445 IPR000571 GO:0046872
Tsu06g01832 733 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 375 399 IPR000571 GO:0046872
Tsu06g01832 733 Gene3D - 370 455 - -
Tsu06g01832 733 SMART c3hfinal6 419 446 IPR000571 GO:0046872
Tsu06g01832 733 SMART c3hfinal6 372 399 IPR000571 GO:0046872
Tsu06g01832 733 SUPERFAMILY CCCH zinc finger 375 400 IPR036855 GO:0046872
Tsu06g01832 733 SUPERFAMILY CCCH zinc finger 421 447 IPR036855 GO:0046872
Tsu06g01832 733 PANTHER PROTEIN PHOSPHATASE RELATED 644 723 - -
Tsu06g01832 733 PANTHER PROTEIN PHOSPHATASE RELATED 366 643 - -
Tsu06g01832 733 MobiDBLite consensus disorder prediction 1 41 - -
Tsu06g01832 733 MobiDBLite consensus disorder prediction 1 36 - -
Tsu06g01832 733 ProSiteProfiles Zinc finger C3H1-type profile. 419 447 IPR000571 GO:0046872
Tsu06g01832 733 MobiDBLite consensus disorder prediction 658 733 - -
Tsu06g01832 733 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 644 723 - -
Tsu06g01832 733 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 366 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01832 Tsu-Chr6 21826176 21833386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01832 365 694 C2H2 Transcription Factor Family AT5G18550 48.219 9.54e-92 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu06g01832 zf-CCCH 4.6e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01832 - - gmx:100812433 457.218