Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu06g01797 | atggCACCAAAACCAACCAAAGCTGAGAAGAAGCAGAACTACGATTCCAAATTGTGCCAACTTCTAGATGAATTTACTCAGATTCTAGTTGTTAATGCTGATAATGTTGGATCTAACCAACTTCAGAGTATTCGAAGAGGTCTTCGTGGTGATTCCGTTGTTCTTATGGGGAAGAACACTATGATGAAAAGATCTGTTAGGATCCACGCTGAGAAAACTGGAAACAATGCTTTCCTTAACCTTGTTCCTCTCCTTGTTGGTAATGTGGGTTTGATTTTCACCAAGGGTGATTTGAAGGAAGTTAGTGAAGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTTGTTGTTCCTCCCGGCAACACAGGGCTCGACCCATCCCAGACCTCTTTCTTCCAGGTCCTTAACATCCCAACAAAGATTAACAAGGGTACTGTCGAAATCATTACCCCTGTTGAACTCATCAAGAAGGGAGACAAGGTTGGATCTTCCGAAGCTGCATTGCTTGCCAAGCTAGCCATTAGGCCCTTTTCATATGGGCTTGTGGTCCTTTCTGTTTATGATAATGGATCTGTTTTCAGCCCTGAGGTTCTTGATCTTACTGAGGATGACCANCATTGCGAAAATGTTCTTGCTGTTGCTGTGACAACTGAATATTCTTTCCCCGAGGCTGACAAGGTTAAGGAGTTCTTGAAGGACCCAAGTAAGTTTGCCGTAGCTGCCCCAGCTGCTGCTTCTGGTGGTGCCCCTGCAGCAGCcaaagaagaggagaagaagcCCGAGCTAGAAGAAGAATCCGATGAAGAAATGGGTTTTGGTCTGTTTgatgaataa | 861 | 0.4321 | MAPKPTKAEKKQNYDSKLCQLLDEFTQILVVNADNVGSNQLQSIRRGLRGDSVVLMGKNTMMKRSVRIHAEKTGNNAFLNLVPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLAIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDXHCENVLAVAVTTEYSFPEADKVKEFLKDPSKFAVAAPAAASGGAPAAAKEEEKKPELEEESDEEMGFGLFDE | 286 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu06g01797 | 286 | Pfam | 60s Acidic ribosomal protein | 218 | 284 | - | - | |
| Tsu06g01797 | 286 | Pfam | Insertion domain in 60S ribosomal protein L10P | 114 | 183 | IPR040637 | - | |
| Tsu06g01797 | 286 | SUPERFAMILY | Ribosomal protein L10-like | 8 | 134 | IPR043141 | - | |
| Tsu06g01797 | 286 | PIRSF | L10E | 1 | 217 | IPR030670 | GO:0042254 | |
| Tsu06g01797 | 286 | PIRSF | L10E | 214 | 285 | IPR030670 | GO:0042254 | |
| Tsu06g01797 | 286 | Gene3D | - | 114 | 185 | IPR043164 | - | |
| Tsu06g01797 | 286 | PANTHER | 60S ACIDIC RIBOSOMAL PROTEIN P0-1 | 217 | 285 | - | - | |
| Tsu06g01797 | 286 | PANTHER | 60S ACIDIC RIBOSOMAL PROTEIN P0-1 | 1 | 214 | - | - | |
| Tsu06g01797 | 286 | Pfam | Ribosomal protein L10 | 7 | 108 | IPR001790 | - | |
| Tsu06g01797 | 286 | PANTHER | 60S ACIDIC RIBOSOMAL PROTEIN P0 | 217 | 285 | - | - | |
| Tsu06g01797 | 286 | PANTHER | 60S ACIDIC RIBOSOMAL PROTEIN P0 | 1 | 214 | - | - | |
| Tsu06g01797 | 286 | MobiDBLite | consensus disorder prediction | 270 | 286 | - | - | |
| Tsu06g01797 | 286 | MobiDBLite | consensus disorder prediction | 257 | 286 | - | - | |
| Tsu06g01797 | 286 | CDD | Ribosomal_P0_L10e | 9 | 185 | - | - | |
| Tsu06g01797 | 286 | Gene3D | - | 6 | 209 | IPR043141 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu06g01797 | Tsu-Chr6 | 20895396 | 20896353 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu06g01797 | 1 | 284 | Cytoplasmic Ribosomal Protein Gene Family | AT2G40010 | 73.734 | 9.16e-155 | 432 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu06g01797 | K02941 | - | gmx:100777482 | 417.927 |