Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01789 ATGGCGGAATTAGAGAACGACCACCACACTTCACCGGAGCACGAGGACAACAGTCATAAGAAGAAGAAGCTTCGCAAGAGGAAAAGATCTCGTAAGTTGGAACAAGAAGTTGAAAAACAACAAGAGGAGGAGAACATTGTAAACGcagaatctgaagaagaagaagaagaggaggagaAGAATCATGAACCACAacaaggagaagaagaagaagaagaagaagaagaaagagacgGTGATGACGGCgaagaagatgaagacaaaAAAGTGGAGACCATTGTGTCTTCTGGAATAATGAGCAAAGAGTCTTTTTCGTCTCTAGGGTTATCTCAACCTACTTCTAAGTCTATAAATGATATGGGTTTTAATCGTATGACTCAGATTCAAGCGAAGGCGATTCCGCCTCTTTTGATGGGAAAGGATGTTCTTGGTGCTGCAAGGACAGGTGCTGGTAAAACACTTGCATTTTTAATTCCAGCTGTGGAATTGTTGTACAATGTTCAGTTCACGCCTCGTAACGGAACTGGTGTTGTTGTAATTTGCCCAACTAGAGAACTTGCCATTCAGACACATGCTGTGGCAAAGGAACTACTGAAGTATCATTCGCAAACTCTCGGATTAGTTATTGGGGGTTCGGGTAGAAAAGGAGAAGCTGAGCGCATTGTTAAAGGGGTAAATCTGTTGGTTGCAACCCCTGGCCGTCTTCTTGATCACCTTCAGAATACGAAAGGGTTCATATATAAAAACTTGAAGTGTCTCATGATTGATGAAGCAGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATCATTAATATACTTCCAAAGAAAAGGCAAACAGCTTTGTTTTCGGCCACACAAACAAAGAAGGTTGAGGATCTTGCCCGCTTGTCTTTTCAGACACCTCCCGTCTATGTTGATGTAGATGATGGGAGAAAAAAGGTCACAGTTGAAGGATTGGAGCAGGGCTATGTTGTTGTTCCCTGTGCCCAGCGCCTTGTTGTTCTATATTCATTCTTAAAGAGATTTCAATCCAAAAAAGTGATGGTTTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCCGATCTCCTTAAGTTCATTGGATTAGACTGTTTAAATATTCATGGAAAACAAAAGCAGCATGCCCGGACAACTACCTTCTTCAACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATTCCTGATGTgGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCATAGAGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAAATGCAATTTCTTCGCTATTTGAAGGCAGCAAAGATTCCTGTGAAAGAGTATGCATTTGCTGATAAAAAGCTTGCAAATGTACAATCTCAGCTGGAGAAGATGGTGGCCAGCATTTATCATTTGAACACTATGGCTAAAGATGCTTATAGGTCTTATATATTGGCATATAATGCACATTCTATGAAGGAAATATTCAATGTTCACCGCCTTGATTTACTGGCTGTTGCTACTTCATTCTGTTTTACAAACCCACCGAAGATAAGTCTGAACATAGACAGCAGTGCTTCAAAGCATAGGAAGAAAATTCGCAAAGTAGAAGGAAGAAGACATTGA 1704 0.3903 MAELENDHHTSPEHEDNSHKKKKLRKRKRSRKLEQEVEKQQEEENIVNAESEEEEEEEEKNHEPQQGEEEEEEEEERDGDDGEEDEDKKVETIVSSGIMSKESFSSLGLSQPTSKSINDMGFNRMTQIQAKAIPPLLMGKDVLGAARTGAGKTLAFLIPAVELLYNVQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTPPVYVDVDDGRKKVTVEGLEQGYVVVPCAQRLVVLYSFLKRFQSKKVMVFFSSCNSVKFHADLLKFIGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEEMQFLRYLKAAKIPVKEYAFADKKLANVQSQLEKMVASIYHLNTMAKDAYRSYILAYNAHSMKEIFNVHRLDLLAVATSFCFTNPPKISLNIDSSASKHRKKIRKVEGRRH 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01789 567 PANTHER RNA HELICASE 66 548 - -
Tsu06g01789 567 MobiDBLite consensus disorder prediction 47 87 - -
Tsu06g01789 567 SMART ultradead3 121 326 IPR014001 -
Tsu06g01789 567 MobiDBLite consensus disorder prediction 1 89 - -
Tsu06g01789 567 Gene3D - 322 561 IPR027417 -
Tsu06g01789 567 CDD SF2_C_DEAD 323 453 - -
Tsu06g01789 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 285 IPR027417 -
Tsu06g01789 567 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 102 130 IPR014014 GO:0003724
Tsu06g01789 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 464 IPR027417 -
Tsu06g01789 567 SMART DUF4217_3 483 546 IPR025313 -
Tsu06g01789 567 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 338 492 IPR001650 -
Tsu06g01789 567 Coils Coil 23 60 - -
Tsu06g01789 567 Pfam Helicase conserved C-terminal domain 337 442 IPR001650 -
Tsu06g01789 567 MobiDBLite consensus disorder prediction 1 19 - -
Tsu06g01789 567 SMART helicmild6 362 443 IPR001650 -
Tsu06g01789 567 Gene3D - 47 312 IPR027417 -
Tsu06g01789 567 Pfam DEAD/DEAH box helicase 126 297 IPR011545 GO:0003676|GO:0005524
Tsu06g01789 567 Pfam Domain of unknown function (DUF4217) 484 544 IPR025313 -
Tsu06g01789 567 MobiDBLite consensus disorder prediction 31 46 - -
Tsu06g01789 567 CDD DEADc_DDX18 113 310 IPR044773 GO:0003724|GO:0005524
Tsu06g01789 567 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 133 308 IPR014001 -
Tsu06g01789 567 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 254 262 IPR000629 -
Tsu06g01789 567 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 66 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01789 Tsu-Chr6 20835464 20842152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01789 102 461 Eukaryotic Initiation Factors Gene Family AT3G13920 30.663 1.40e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01789 K13179 - gmx:100798290 879.782