Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01783 ATGGAGCCCATGGATATTGTTGCAAAATCAAAAGAAGATGCTTCGCTTcccaaagCAACAATGACGAAAATTATTAAAGAGATGTTGCCCCCTGATGTGCGTGTTGCAAGAGATACCCAGGATTTGTTGATTGAATGTTGTGTAGaGTTCATAAACCTCGTCTCATCAGAGTCAAATGAAGTATGTAacagagaagaaagaaggaCGATTGCACCTGAGCATGTATTGAAGGCTTTAGGGGTTCTTGGATTTGGCGATTACATTGAGGAAGTTTATGCAGCATATGAACAGCACAAGATGGAGACAGTGCAGGACAATATAAAAGGTGCCAAGTGGAGTGGTGCAGCTGAGATGACAGAAGAACAAGCATTAGCGGAGCAGCAAAGGATGTTTGCCGAGGCACGTGCTAGAATGAATGGAGGGACCATTTCTTCCAATCAACCCGATGCTGACCAAAGTTTAGAAAACTAA 471 0.4055 MEPMDIVAKSKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLVSSESNEVCNREERRTIAPEHVLKALGVLGFGDYIEEVYAAYEQHKMETVQDNIKGAKWSGAAEMTEEQALAEQQRMFAEARARMNGGTISSNQPDADQSLEN 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01783 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Tsu06g01783 156 MobiDBLite consensus disorder prediction 137 156 - -
Tsu06g01783 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Tsu06g01783 156 MobiDBLite consensus disorder prediction 139 156 - -
Tsu06g01783 156 Gene3D Histone, subunit A 4 142 IPR009072 GO:0046982
Tsu06g01783 156 Coils Coil 115 135 - -
Tsu06g01783 156 SUPERFAMILY Histone-fold 12 142 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01783 Tsu-Chr6 20714732 20718202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01783 1 149 CCAAT-DR1 Transcription Factor Family AT5G23090 81.879 2.86e-89 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tsu06g01783 CBFD_NFYB_HMF 2.6e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01783 K21751 - gmx:547635 281.952