Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01782 ATGGAGCAACAACGTCTAGCACCAGCTAATGATGACATAGTTGTCACTTTTCGTTGGAATAGAAACAGAAATGCTTATGAAATGCATCGTCACAGGAGAGGTGAGAACCAACCTCCTTTGCTGACTAGTGAAGATTGGGACATGCGTTATTATTACAGAGATGGCGTCCTCATTTTTcaagaaaacaacaacaatcagAGTCGGTGCTTTCAAAGAGAAAATCTTCGACGAATTAGGATTGAAGAAGGAGTATCATGCTCCACCTGTTCCATTTGTTTTGAAGAATTTCTAGTTGGGTCAGAAGTGATTCAGTTGCCCAACCTGTGTTGTCATGTTTATCATCAAGATTGCATTATGAGGTGGCTCAGTACGTCTGGAAATTGCCCATTGTGTCGTAGGCATGTCTCGTAA 411 0.3966 MEQQRLAPANDDIVVTFRWNRNRNAYEMHRHRRGENQPPLLTSEDWDMRYYYRDGVLIFQENNNNQSRCFQRENLRRIRIEEGVSCSTCSICFEEFLVGSEVIQLPNLCCHVYHQDCIMRWLSTSGNCPLCRRHVS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01782 136 SMART ring_2 89 131 IPR001841 -
Tsu06g01782 136 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 61 133 - -
Tsu06g01782 136 Pfam Ring finger domain 88 132 IPR001841 -
Tsu06g01782 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 136 IPR013083 -
Tsu06g01782 136 ProSiteProfiles Zinc finger RING-type profile. 89 132 IPR001841 -
Tsu06g01782 136 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 61 133 - -
Tsu06g01782 136 SMART ringv_2 88 132 IPR011016 GO:0008270
Tsu06g01782 136 SUPERFAMILY RING/U-box 88 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01782 Tsu-Chr6 20693203 20693613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01782 73 132 C3H Transcription Factor Family AT3G60080 38.571 3.52e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01782 K16271 - cam:101490108 157.147