Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01754 ATGGATATATCTTGTAAAACACAAATTTGGACTGTCAGGTTATGTATGCTCGATTCGTGTGTTTACGTGCCAAATACATTCTTTTGGCTCGTGAAGCTGCAATTTCAATTCAAGGATAGATGGCAGAAAGAGAAGGTTCCATTGATGCAGTTGGAGTATTTGGCCGACTATATAGTAGAGCTATCGCTTCTAGAGTATGATATGCTCAAGTATACACCGTCATTAGTAGCTGCTTCAGCCACTTTATTGGCTAAATATATACTACTTCCTAGGAAGAAACCTTGGGTTACCAAGCACCAGAATTGCGTGAACGTGTTAAGGGATTGCATCTATTGTACTGCAACGGCTATCAAAATTTACCTTCCATTACTGCTATCAAAGAAAAATACAGTCAGCATAAGGTATTTAATGACCCAAAAAGATTAA 426 0.3803 MDISCKTQIWTVRLCMLDSCVYVPNTFFWLVKLQFQFKDRWQKEKVPLMQLEYLADYIVELSLLEYDMLKYTPSLVAASATLLAKYILLPRKKPWVTKHQNCVNVLRDCIYCTATAIKIYLPLLLSKKNTVSIRYLMTQKD 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01754 141 SMART Cyclin_C_2 24 140 IPR004367 -
Tsu06g01754 141 CDD CYCLIN 23 105 IPR013763 -
Tsu06g01754 141 Pfam Cyclin, C-terminal domain 45 121 IPR004367 -
Tsu06g01754 141 Gene3D - 13 138 - -
Tsu06g01754 141 SUPERFAMILY Cyclin-like 36 110 IPR036915 -
Tsu06g01754 141 PANTHER CYCLINS 45 100 IPR039361 -
Tsu06g01754 141 SMART cyclin_7 28 126 IPR013763 -
Tsu06g01754 141 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 45 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01754 Tsu-Chr6 20111676 20113284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01754 44 110 Core Cell Cycle Gene Families AT1G44110 54.930 1.58e-17 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01754 K06627 - jre:109008894 85.8853