Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01720 atgAAGGTTCGGTCAGTGAAAATGAGGGAGGCTCACACTCAAAAGGGCGGCCGTGCTTCCTTCTGCTCCGTCTTATGGGACCAAGAAGCCCAACATCTGGTAACTGCCTCTTCTTCCGATGTTTCCGTCTCGATTCATAACCCTATTCTTCCTTCTGCCACCCCTAAAATCCTCCGTCACCACCGTGACGGTGTTACTGCTTTGGCTCTTAGCCCTAATTCCACTTGTCTTGCTTCTGGATCTGTCGATCACTCGGTTAAACTCTACAAATTTCCAGGTGGAGAGTTTGAGACAAATATAACGAGGTTCACACTTCCGATACGTTCCCTAGCATTTAACAAGAAAGGAAGCATGTTAGCAGCTGCAGGTGATGATGAGGGCATCAAGCTCATAAACACAGTTGATGGCTCTATTGCGAGGGTTCTGAAAGGGCACAAAGGACCTGTCACCGGGCTAGCTTTTGACCCTAATGGTGAATACTTAGCATCTCTGGACTCAAATGGAACTGTTATCATATGGGAACTACACTCAGGGAAAAACCTTCACAACCTCAAAGGCATCGCTCCTGACACTGGGTTAGATGTTTCAACCATGAACGTTCTTTGTTGGAGTCCTGATGGTGAGACTTTAGCCATTCCCGGGTTGAGAAACGATGTTGTAATGTATGATAGGGACACGGCTGAGAAGTTGTTCTCTCTAAGAGGGGATCATAACCAGCCTATATGTTTTTTGTGTTGGTCACCGAATGGCAAGTACATGGCTACTTCTGGTTTAGATAAACAGATTCTGATATGGGATGTTGATAGGAAACAGGATATTGACAGACAGAAGTTTGATGAAATAGTGTGTTGCATGGCATGGAAGCCAATTGGGAATGCCTTGTCTGTTATTGATGTTATGGGAAAATATGGCATATGGGACAATGTTATTCCTTCGTCTATGAAGTCCCCAACTGAGGATATACCTATGCAGGGCAAGAACAGTAAAGGGCTTCTTTTGTATGACGAGGAAGATCAGAACAATAGTTTTGGTGAGAGCATGAGTGATCTTGGTGAAAATAGTAATGGGGAGTTTGAGCCACCAACTAGCAGGAAAAGATTGCGCAAACATTCCTTGAGCGAGGAAAATTTTGATGAGGATGGAGAAGATGGAATTGATCTGTATCCAAAAATCGAGTCTCACAAGAAAAGGAACCGGTCAGTCAAGGAAAATTTGGATAATGGCATTGTGGGATTTAGAAGCACAATGTTACCTAAGGCAAAAATGCAGGAGGCATTTCAACCAGGAGCCACTCCAGTGCAGCCTGGAAAAAGGCGCTTCTTATGCTACAATATGCTTGGAAGTATAACCACTGTCGATCACGATGGTTACTCTCATATTGAGATTGATTTTCATGATACTGGAAGTAGTCCTCGAGTTCCATCAATGACTGACCATTTTGGATTTACAATGGCTGCATTGAATGAGAATGGAAGTGTCTTTGCAAATCCATGCAAGGGGGAGAAGAACATGAGCACACTCATGTATCGCCCATTTAGTAGCTGGGCTAGTAATAGTGAGTGGTCTATGCGCTTTGAAGGCGAAGAAGTGAAGGCTGTTGCACTTGGTGCTTCCTGGGTGGCTGCAGTAACTAGTTTTAATTATCTTCGGATCTTTACTGAGGGTGGTATGCAGAGACATGTTATTTCGCTAGACGGGCCAGTGGTGACTGCATCGGGTTTCAAGGATAAGCTTGCAGTTGTCACTCATGCTTCTGATTGCCTTTCCTCAAATGATCAGGTGTTAgagtttaaattatttaatataacaCATGGGACCCAACCCCTTCGCGGTCGCTTGCCAATAACTCCTGGTTCCTCTCTAAGTTGGTTTGGATTTAGTGAAGAGGGCCAATTGTGTTCTTATGATTCCAAGGGTGTGCTAAGATTATATACAAGCCAATTTGGTGGTAGCTGGTTCCCAGTCTTCAGTGCTTTTAAAGAGAAGAAGACAGATGAAAACTATTGGATGGTGGGTTTGAATACAAACAAGTTAGTTTGTGTAGTTTGCAAAAAGCCTGAATTCTTCCCACAGGTGGTGCCTAAACCAATTCTCACTTTAATGAATCTTGCGTTTCCACTCGCTACCTCTGATTTGGGATCTGAAGCCCTTGAAAACGAGTTTATGATGAACAGCATGCATCTCTTTGAGaaaaaaatggaagaaatggatAATGCTGGTTTGGATGCTAGCTTACTTGATGATGCTGCTTTCAATTTGGAAGCAGCACAAGATAGATGCATACTGAGACTTATAGCATCCTGCTGCAATAGTGATAAACTTGTGAGAGCTACGGAGCTTGTGAAGCTTTTGTCACTGGAGAAATCAATGAAAGGTGCAATAAAACTTGTTACTGCTCTGAAGCTTCCAAATTTGGCTGAAAAATTCAATGGCATATTGGAGGAAAGGCTATATAATGAAGTTAAAACGACTAAGGAAACCAACCTCAAGGAAAACAGTTTTGCACCCGTTACATCGAATACTCTACCTAGCGGAAGCAAGGCCGAAACATCGAAAGCATCTATCATTTCATCATCACCAAATTTATCTGCACCGTTGttcacaaagaaaaataaaacacaagagGCAGCTAAAGATGGAATGAATAAAACTGCAACGGTGGATGGAAGTATGAAAGCAAAACAGACAGGAGGGGATGAAACAAGTGACAAGAAGGGTAAGGAGGAAGTGCAAGCTCCTCCTCATCCACATGGTTCGTCGATAAAGTTGACAAATAAGCATGGAGCTAACAAATCAGAGCCTAGTTTGGTGACACCAACAAGACCTTCCAATCCATTTTTGAAGTCTGCaataaaatga 2859 0.4218 MKVRSVKMREAHTQKGGRASFCSVLWDQEAQHLVTASSSDVSVSIHNPILPSATPKILRHHRDGVTALALSPNSTCLASGSVDHSVKLYKFPGGEFETNITRFTLPIRSLAFNKKGSMLAAAGDDEGIKLINTVDGSIARVLKGHKGPVTGLAFDPNGEYLASLDSNGTVIIWELHSGKNLHNLKGIAPDTGLDVSTMNVLCWSPDGETLAIPGLRNDVVMYDRDTAEKLFSLRGDHNQPICFLCWSPNGKYMATSGLDKQILIWDVDRKQDIDRQKFDEIVCCMAWKPIGNALSVIDVMGKYGIWDNVIPSSMKSPTEDIPMQGKNSKGLLLYDEEDQNNSFGESMSDLGENSNGEFEPPTSRKRLRKHSLSEENFDEDGEDGIDLYPKIESHKKRNRSVKENLDNGIVGFRSTMLPKAKMQEAFQPGATPVQPGKRRFLCYNMLGSITTVDHDGYSHIEIDFHDTGSSPRVPSMTDHFGFTMAALNENGSVFANPCKGEKNMSTLMYRPFSSWASNSEWSMRFEGEEVKAVALGASWVAAVTSFNYLRIFTEGGMQRHVISLDGPVVTASGFKDKLAVVTHASDCLSSNDQVLEFKLFNITHGTQPLRGRLPITPGSSLSWFGFSEEGQLCSYDSKGVLRLYTSQFGGSWFPVFSAFKEKKTDENYWMVGLNTNKLVCVVCKKPEFFPQVVPKPILTLMNLAFPLATSDLGSEALENEFMMNSMHLFEKKMEEMDNAGLDASLLDDAAFNLEAAQDRCILRLIASCCNSDKLVRATELVKLLSLEKSMKGAIKLVTALKLPNLAEKFNGILEERLYNEVKTTKETNLKENSFAPVTSNTLPSGSKAETSKASIISSSPNLSAPLFTKKNKTQEAAKDGMNKTATVDGSMKAKQTGGDETSDKKGKEEVQAPPHPHGSSIKLTNKHGANKSEPSLVTPTRPSNPFLKSAIK 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01720 952 MobiDBLite consensus disorder prediction 359 376 - -
Tsu06g01720 952 MobiDBLite consensus disorder prediction 342 383 - -
Tsu06g01720 952 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Tsu06g01720 952 MobiDBLite consensus disorder prediction 923 945 - -
Tsu06g01720 952 Pfam WD domain, G-beta repeat 140 173 IPR001680 GO:0005515
Tsu06g01720 952 Pfam WD domain, G-beta repeat 56 89 IPR001680 GO:0005515
Tsu06g01720 952 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 909 - -
Tsu06g01720 952 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Tsu06g01720 952 MobiDBLite consensus disorder prediction 342 358 - -
Tsu06g01720 952 MobiDBLite consensus disorder prediction 873 952 - -
Tsu06g01720 952 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Tsu06g01720 952 SUPERFAMILY WD40 repeat-like 10 307 IPR036322 GO:0005515
Tsu06g01720 952 MobiDBLite consensus disorder prediction 897 912 - -
Tsu06g01720 952 SMART WD40_4 135 174 IPR001680 GO:0005515
Tsu06g01720 952 SMART WD40_4 93 132 IPR001680 GO:0005515
Tsu06g01720 952 SMART WD40_4 226 266 IPR001680 GO:0005515
Tsu06g01720 952 SMART WD40_4 51 90 IPR001680 GO:0005515
Tsu06g01720 952 SMART WD40_4 7 47 IPR001680 GO:0005515
Tsu06g01720 952 Gene3D - 195 322 IPR015943 GO:0005515
Tsu06g01720 952 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Tsu06g01720 952 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Tsu06g01720 952 Pfam Anaphase-promoting complex subunit 4 WD40 domain 201 288 IPR024977 -
Tsu06g01720 952 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Tsu06g01720 952 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Tsu06g01720 952 CDD WD40 10 294 - -
Tsu06g01720 952 MobiDBLite consensus disorder prediction 832 855 - -
Tsu06g01720 952 Pfam Minichromosome loss protein, Mcl1, middle region 425 707 IPR022100 -
Tsu06g01720 952 Gene3D - 2 194 IPR015943 GO:0005515
Tsu06g01720 952 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01720 59 269 U-box Gene Family AT2G33340 21.028 6.97e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01720 K11274 - gmx:100818807 1451.03