Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01716 ATGAATACTCCGTTTGATTTTCTCGGGTCGGTGAGTCCTGGAAGGGATTCATGGCGTTTCAAGGTTCGCATACTTAGGTTATGGAATGTGCCCTCTTTTTTGAAGTCTGATCAATCGAACTCGATTGAGATGGTTTTGATTGATGAAAAGgGGGGTAAGATTCATGCATCTGTTCGTCGTCAGCTGGTTTATCTTTTTGGTTCCAAAATTACTGAGGGGGATGTTTATAAGATGTCGTTTTTCACGGTGTCCCCGGAATCTGGTTTGTATCGTCCAACTCCTCATCCTTACAAACTTAACTTTGAGATGAAAACCAAAGTTCAGGCGTGTGAAAATCGTGAAATAGATCCATATGGTTTGTCACTCACTTCAATTGGAGATGTTATTATACATGGATCTGATCATGATTTTTTAGTTGATGTCATTGCTGTGATAACTGGTATTTCTGCTGAGAGGGAGTATATTCGTGATGGAAAGGTTACTAAGATGATTGTGCTTGAGTTGACCGATAATGGTGGAAAATGCGAGTGTGCATTGTTTGGTGGTTATGTCAAGGATCTTCAGGAGATGCTTGTGAAGAATGGTGATGCATTGCCAGTGTTTGTTATTCAGTTTGCCAAAATTAAGAATTTCGGAGGTAATGTGTCTGTTCAAAATGTTTTGAATGCTACCAGAATTTTTGTGAATCCTGATATACCAGAAGTTGTTTCTTTCAAGAAAACCTTGGCTGTTGTTGGTGTTAATTCATCTGTTTCCATACCTGCTATTGGACACCGTGTCAAGACTTCATTTGAGGATGACTTTTTGCTTAAGTATCCTAGGACTTCCATAGCTCATTTGCTTGAACTGGTCACTGATGGTATATATGTGGTTGATGGTGTTGTTGATTGTTTGGTTGAAGATGAAGACTGGTGGTATGCATCATGTAAGTGTCATAGAAGTCTTACTACTGATTCAGGGGCATATTATTGCAAGAGATGTGACAAGCATGTTTTCAAGATGGTTCCAAGgtttaGGGTAAATCTGAGGGTTGGTGATGGTACTGTTGATGCTGTGTTTGTTGTCATTGATGCTGATATGAATGCTTTGGTTGGTTAA 1098 0.3925 MNTPFDFLGSVSPGRDSWRFKVRILRLWNVPSFLKSDQSNSIEMVLIDEKGGKIHASVRRQLVYLFGSKITEGDVYKMSFFTVSPESGLYRPTPHPYKLNFEMKTKVQACENREIDPYGLSLTSIGDVIIHGSDHDFLVDVIAVITGISAEREYIRDGKVTKMIVLELTDNGGKCECALFGGYVKDLQEMLVKNGDALPVFVIQFAKIKNFGGNVSVQNVLNATRIFVNPDIPEVVSFKKTLAVVGVNSSVSIPAIGHRVKTSFEDDFLLKYPRTSIAHLLELVTDGIYVVDGVVDCLVEDEDWWYASCKCHRSLTTDSGAYYCKRCDKHVFKMVPRFRVNLRVGDGTVDAVFVVIDADMNALVG 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01716 365 CDD RPA1_DBD_A_like 21 107 - -
Tsu06g01716 365 Gene3D - 114 251 IPR012340 -
Tsu06g01716 365 Gene3D - 275 365 IPR012340 -
Tsu06g01716 365 SUPERFAMILY Nucleic acid-binding proteins 286 364 IPR012340 -
Tsu06g01716 365 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 360 - -
Tsu06g01716 365 Pfam Domain of unknown function DUF223 43 125 IPR003871 -
Tsu06g01716 365 Gene3D - 7 110 IPR012340 -
Tsu06g01716 365 CDD RPA1_DBD_B_like 140 242 - -
Tsu06g01716 365 SUPERFAMILY Nucleic acid-binding proteins 120 246 IPR012340 -
Tsu06g01716 365 SUPERFAMILY Nucleic acid-binding proteins 4 113 IPR012340 -
Tsu06g01716 365 PANTHER REPLICATION FACTOR A 1, RFA1 22 360 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01716 Tsu-Chr6 19355068 19356712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01716 8 348 Core DNA Replication Machinery Family AT5G45400 23.161 1.31e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01716 - - mtr:MTR_8g062030 399.823