Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01693 ATGAAGGATCCAAAGGAGTATCAAGTGAAATCAAGCCTTCTACAAAAAATTGCAGAGCAAAGCAGATGGAGCAAAAAAAGAAGCAACCAAATCAAAGCAGATAAATCACAAGAAGCAGGACATGATTCAAAACTGGTTTCCTATCCAACTTGCAAGAAGAGTCTTGTGTTTTCTAGCAGGCCTGGCTATGGCCAACTAGGGACTAAGTGCATCATCAAAGCTAACCACTTCCTTGTAGATATATCAGTCTCTGATTTAAGTCATTACAATGTTAAAATAATACCTGAAGTCAGTTCTAATAAAACAAGAAAGGCTGTCATATCTGAGCTTGTGAGGCTTCATAGGAACACTGATTTGGCCAAGAGGCTGCCTGCTTATGATGGAGGAAGAAATCTTTACACTGCTGGTTTGCTACCTTTTACATATAAAGAATTTAGTGTAACATTGAGCGACGATGATTACGTTACCGGCAGCATCAGGGAAAGAGAATTTAAGGTAGCAATCAAGTTTGCAAGTAGTGTTAAAATGCAACAACTTAGGGAACTTCTAAGTGGGAAAAAAGTGGACACTCCACAAGAAGCACTTACTGTCTTTGACATTGTGTTGAAGGAGGTTGCAGCTCAAAGTTACATATCAATTGGAAGATGTCTCTATTCACCTGATGTAAGGAAACCACAGCAACTTGGTGGTGGCATTGAATCATGGCGTGGATTTTATCAGAGTATAAGGCCAACTCAAATGGGATTGTCACTTAACATTGATATGTCATCAATGGCATTTATTGAACCACTGCCTGTAATTGAATTTGTTGCTCAAATTCTTGGAAAAGAAGTGCAATCAAAACCATTGTCAGATGCAGATCGTGTCAAGATTAAAAAGGCACTAAGAGGTGTAAAAGTTGAAGTCACACATAGAGGGAATTTTAGAAGGAAGTACAGAATATCAGGATTGACTTTACAACCAACAAGGGAGCTTATTTTTCCTCTTGATGAGCAAATGAACATGAAATCAGTAATTGATTATTTTCAAGAAATGTATGGATATACAATCAAATATACTCATTTACCTTGCCTTCAAGTAGGAAGTCAAAGGAAGGTCAACTATTTGCCCATGGAGACATGCAAGATAGTTAGGGGCCAGAGACATACAAAAGGGCTGAATGATAAGCAAATAACTTCACTGCTGAAGTTCTCATGCCAGAGACCCCGTGAACAGGAGACAGACATTTTACAGacaattgaacaaaaaaattatgagaatAATCCCTATGCAAAGGAGTTTGGCATCAGCATAGACAACAAGCTTGCATCAGTCGAGGCTCGGGTTCTACCTCCTCCATGGTTGAAATATCATGACACtggaagagagaaagaatactTACCACAAGTTGGTCAATGGAATATGATGAACAAGAAAGTTATAAATGGAAGTACAGTTAGATATTGGGCATGCATCAATTTCTCACGAAGCGTACAAGAAAGTACAGCTTGTGGATTTTGCCAACAGTTAATTCAGATGTGTAAAATCTCAGGCATGGAATTTAGTCAGGAACCTGTCATTCCTGTGTATTCAGCAAGACCAGATCAAGTCAAGAAAGCTTTGAAGCATGTACAGAATACTGCTCTAGACAAACTTGGTGGTAAAGAGCTAGAATTCTTGATTGCCATTCTTCCAGACAACAATGGCTCTTTGTATGGTGATCTCAAAAGAATCTGCGAAACGGATCTGGGGTTGATTTCTCAATGCTGCCTGGAAAAATATGTAATCAAGATTAACAGACAGTACCTGGCAAATGTTGCACTAAAAATCAATGTGAAGATGGGAGGAAGAAACACAGTACTTTTGGATGCTTTAAGTTGGAAGATTCCACTGGTTAGTGATATTCCAACAATAATATTTGGAGCTGATGTAACTCATGCAGAATCTGGAGACGATAGTTGCCCATCCATTGCTGCTGTTGTAGCCTCCCAGGATTGGCCAGAAGTAACAAAGTATGCAGGGTTAGTTTGTGCTCAGCCTCACCGTGAAGAGCTCATCCAAGATCTTTTCAAATGTTGGAAAGATCCACAGATTGGTGTAGTTTATGGTGGTATGATTAGGGAGCTTTTACTCTCATTTAAGAAGGCAACTGGACAAAAACCgttgagaataattttttatagGGATGGGGTAAGTGATGGACAGTTCTACCAAGTTTTGCTGTATGAACTTGACGCCATCCGTAAGGCTTGTGCGTCTTTGGAACCAAGTTACCAACCTCCAGTAACATTTGTTGTGGTCCAAAAACGGCATCACACAAGACTATTCCCAAACAATCACAACGACAGAAACAGCACTGATACGAGTGGGAATATCTTACCTGGTACTGTGGTGGATTCAAACATCTGCCATCCGACTgaatttgatttctatttatGCAGTCATGCAGGAATTCAGGGTACAAGTAGACCAGCACACTATCATGTCCTCTGGGATGAGaacaaattcagtgcagatgaGATTCAGTCTCTAACTAACAACTTATGCTACACCTATGCAAGATGTACGCGGTCTGTTTCTGTAGTACCTCCAGCATACTATGCTCATCTGGCAGCCTACAGAGCTCGATGCTATATGGTACCCGATCATCCAGAGATCGCTAAACTCCGAGGTGCAAGATCAAAAGATAAGGCTGTTAGGCCACTTCCTGCATTGAAAGAGAACGTGAAGAATGTAATGTTTTATTGCTAA 2730 0.3901 MKDPKEYQVKSSLLQKIAEQSRWSKKRSNQIKADKSQEAGHDSKLVSYPTCKKSLVFSSRPGYGQLGTKCIIKANHFLVDISVSDLSHYNVKIIPEVSSNKTRKAVISELVRLHRNTDLAKRLPAYDGGRNLYTAGLLPFTYKEFSVTLSDDDYVTGSIREREFKVAIKFASSVKMQQLRELLSGKKVDTPQEALTVFDIVLKEVAAQSYISIGRCLYSPDVRKPQQLGGGIESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIEFVAQILGKEVQSKPLSDADRVKIKKALRGVKVEVTHRGNFRRKYRISGLTLQPTRELIFPLDEQMNMKSVIDYFQEMYGYTIKYTHLPCLQVGSQRKVNYLPMETCKIVRGQRHTKGLNDKQITSLLKFSCQRPREQETDILQTIEQKNYENNPYAKEFGISIDNKLASVEARVLPPPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESTACGFCQQLIQMCKISGMEFSQEPVIPVYSARPDQVKKALKHVQNTALDKLGGKELEFLIAILPDNNGSLYGDLKRICETDLGLISQCCLEKYVIKINRQYLANVALKINVKMGGRNTVLLDALSWKIPLVSDIPTIIFGADVTHAESGDDSCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPQIGVVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSDGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFPNNHNDRNSTDTSGNILPGTVVDSNICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARCYMVPDHPEIAKLRGARSKDKAVRPLPALKENVKNVMFYC 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01693 909 ProSiteProfiles Piwi domain profile. 552 873 IPR003165 GO:0003676
Tsu06g01693 909 Pfam Argonaute linker 1 domain 212 261 IPR014811 -
Tsu06g01693 909 ProSiteProfiles PAZ domain profile. 264 378 IPR003100 GO:0005515
Tsu06g01693 909 CDD Piwi_ago-like 422 872 IPR045246 -
Tsu06g01693 909 MobiDBLite consensus disorder prediction 20 39 - -
Tsu06g01693 909 CDD PAZ_argonaute_like 263 377 - -
Tsu06g01693 909 Pfam Argonaute linker 2 domain 406 450 IPR032472 -
Tsu06g01693 909 Gene3D paz domain 258 382 - -
Tsu06g01693 909 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 17 908 - -
Tsu06g01693 909 SUPERFAMILY Ribonuclease H-like 541 871 IPR012337 -
Tsu06g01693 909 SMART PAZ_2_a_3 268 400 IPR003100 GO:0005515
Tsu06g01693 909 SMART DUF1785_2 211 263 IPR014811 -
Tsu06g01693 909 Pfam Piwi domain 553 872 IPR003165 GO:0003676
Tsu06g01693 909 Pfam Mid domain of argonaute 461 539 IPR032473 -
Tsu06g01693 909 SUPERFAMILY PAZ domain 259 418 IPR036085 GO:0005515
Tsu06g01693 909 Pfam PAZ domain 269 394 IPR003100 GO:0005515
Tsu06g01693 909 Gene3D - 442 615 - -
Tsu06g01693 909 Pfam N-terminal domain of argonaute 69 202 IPR032474 -
Tsu06g01693 909 PANTHER PROTEIN ARGONAUTE 10 17 908 - -
Tsu06g01693 909 SMART Piwi_a_2 552 873 IPR003165 GO:0003676
Tsu06g01693 909 Gene3D - 621 909 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01693 Tsu-Chr6 18939943 18948705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01693 52 909 Eukaryotic Initiation Factors Gene Family AT5G43810 72.727 0.0 1361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01693 K11593 - gmx:100810235 1566.21