Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01687 ATGTCTGACCCAAAGCATGATGTGTTCCTAAGCTTTAGAGGAGAGGACACTCGTGACAACTTCACGAGTCATCTTTATGCAGAATTGCGTAGgaaaaacatcaaaacattCATAGATTATAGCCTTGAGAGAGGTGATGAGATTTTCCCAACCCTGTACAGAGCAATAGAAGAATCAAAAATTTATGTGATCATTTTGTCAGAACACTATGCTTCTTCCAGTTGGTGTTTAGATGAACTTACAGAGATACTGAAATGTAAGGAGAGATATGGAAGGGAAGTGATACCAGTGTTCTATAAGAAGGCTTCTCTAACCCAAATAGCTGGACTCTCTGGCTGGGATTCACAAGTAACAAGACCAGAAAGCATACTTGTTACAGAGATTGTGAaagatattttgaaaaaattgaatagtTGTTTCATAGGCGATTATGAAGGAATGCCGGGAATTGACATGCATGTTGAACAAATTCAATCCTTGTTGCTCCTCGAGTTGCCGACTGTTCGTATCACAGGAATATGGGGCATGGGAGGGATAGGCAAAACAACAATTGCTAGTGCAGTGTTTGAAAAACTCGCAACTCAGTTCAGTTCCAAAATCATCATTCTAAATGTTCAACAAGAAATAGAAAGAGTTGGACTAAACCATTTAAAAAGCAAATACATATCAAAACTTCTTGGGGAAGACATTACATCCTTTGAATACAATCTTTCATTTGATCCAAGGCTCAAACGAATAAAGGTTCTTCTTGTTTTTGATGACGTGAAAGATTCTGATTTACTTAAAGATTTAATTGGAACACGTAGTAACTTTGGCCAGGGGAGTAGGATCATTGTGACTAGTAGAGACAAACAAGTACTTGAGAATGCCAATGCCGATAATATATACCATGTTAGGGAAATGGATTATCAAGATTCTCTACAACTCTTCTGTTTATTTGCctttaaacaaaaacaaccaataAAATCTTATGTGAGCTTATCAGAGAAGGTTTTAGATTATGCTAAAGGGCTTCCATCAGCTCTCAAAGTTTTGGGCTCATTGCTTTATGGCAAAACTAAGGAAGTATGGGAAAGTCAACTGGAAAAGCTTAAAAAGCTTCCTGATCATAAAATTTTTAGATTGTTGGAGTTGACTTATTACGGACTTGACGACGAACAAAAGGATATATTTCTTGACATAGCTTGCTTTTATAAAGGAGAATTTGAAACACTTGTAGAACAAACATTGGGTTATTGTGGTTTCTCTGCTCGCAATGGAATGGACGTTCTTCAAGATAGGTGCCTTATATATATTTCAGAAGGTAGAGTTTGGATGCATGATCTAATACAAGAAATGGGGCATGAAATTGTTCGGCTTCAATGTGTCAATGATCCTGGAAAACGAAGCCGATTATGGAAGCCTAACTATATTTATGATGTATTGAGTAAGAATGAGGGGACGGATACAATCCAGTGTATATTCTTAAACACGAGGGAAATTAAGGAAGTTCAACTACAGGctaaaactttcaaaaaaatgCATAATCTTAGAATGCTCAAGTTCTGTAAGTATTCATGGAGCGACCCAAATGTAATCTTTCACGACTTTCATGACTTTCATAGTTTGTACTTGTTGAGTGAGTCAAAGGTAACTTTTCATGCGTTTCCCAAGAGTTTTCCAGATCATTTAAAACTTCTTTGTTGGGATGAATTTCCCCAAAGATCTTTGCCGCAAGACTTTTCCCCAAAAAATCTTGTTATACTTGAAATGATATATAGCCAACTTAGACAACTTTGGGAGGGGGATCAGGCTTTACCAAATTTGAAAAGGCTTAATCTTAGCTATTCTAAGGAGTTGATAAAAGTACCAGACCTCTCTTTGTCTCCAAATATTGAAGAAGTATTTCTTAGTGGTTGTAAAAGTTTGGTACAAGTTTACTCCTCTAGCTTCATCGACAAGCTTAATTGGTTATGTTTAGATGATTGTACCGAACTTAAAAGGTTAGATATTCGGAGCAATATTCTGTCGAGATCATTTGGATCAGTTGGTCTCAATGATTGTGATAACCTTGAAACACTTTTAATCAGCAGTAGAACTGATGAGGGGAAGTACATAATTTGGGAAACCGATTCAAATACTCATACAAGTATCAATGAGTTTTGTTCGTTAGATATTTCCTATTGCGAGTCCCTAACATGCCTACCGGCTGAACTTTTAAATTCAAAGTTTCTGAAAAGACTTTGTCTCGAAGGTTGTTTAAAGTTGGAGGAGTTACCTGAAATCGGAGAGAATATGAAAAATCTAAAAGAGCTCAACTTAAACAAAACATCAATAAAAGAACTACCTTCATCCTTGCACCGTTTAGTCGGGCTTGAAATATTGAGCTTGAAAAGTTGCACAAAGCTTAAGATTATTCCATCTTCCATTGGAAATCTCAGTAAACTCCTCGAGTTAAACCTTGCCAATTGTGCATCACTTGAAACTTTTCCAAgaagcattttcaaattgaAGTTGACAATACTCAATTTCCAGGGTTGCTTAATGCTTAGGACCTTTCCAGAGATCTTGGAGCCTGCAGAAAGTTTTGCTCGCATTAACTTAAACGAAACAGCAATAAAAGAACTACCTTCATCACTGCACCATTTCGTCGGGCTTAAAGAATTGAGCTTGCAAAGTTGCACAAAGCTTAAGACTATTCCATCTTCCATTGGAAAACTCAAAACACTCTTCAAGCTAAACCTTTCTGATTGTGTATCACTTGAAACTTTTCCAAGCAACATTTTCAAATTGAAGTTGACAGAACTCAATTTCCAAGATTGCTCAATGCTTTGGAACTTTCCAGAAATCCCATATAACATTGGTCGCTTGTCATTCTTGTCAAAACTTTCACTGCAAGGAAGCAGTATTGTAAACCTTCCCGAGAGTATGGCTAACATCTCAAGTTTGAAATCACTTGATTTAACTGATTGCAAACAGCTTGAATGTATCCCAAAGCTTCCGCTGAATCTAGACATGTTGTTGGCATTTGACTGCCCATCCATTAAGAGAGTTGTGTTGAATTCAGAGCTGCAACTCGTGTCTAATTCCAAAGATGTTATCTTCAACATTCATCTCACCAATATTGAAGAATTAGACGCAACTTTTTGGAGTAATATTGGAGTCGAAGCATGGATTAAAATCACTGATGATGCATATAGGTCAGTGTTCTTCTGGTTTCCAAGAAGTGCAATTCCTGGTTGGTTCCCTTACCGTTGCCATGGACATTCAATAACTATGAAAGAAGTTCATCGATATGTGTGCAATGAAAATATGCTCATTGGTTTCACAGTGTGTGTTGTTTTGGGACATAAAGAAATGGATGCCATGATAACACTAGGTACTGGCTTTAGATACAATTTCAGATTTGAAGCTGACGGTGATTCATACATTAATTACCACAATGCGCCTAGAGACTATATCTTACAGAAGGGTAAAAATAGGTTTTTCAGCCAAGATCACACATTCATGTGGAAGCATAAATTGGACATGGCAAACATTGGCAACAGGTTCGTTCATGCCCAGAACTTCACTTTTGAGATCGTAGATGAGCATTTACGTCCCTTAAGTTCTCAATCATCCTTCACGGTGAAAGAATGTGGAATATatggGGGCTATTTGTTACAGGTTGTAGCCTCCCAGGACTGGCCAGAAGTAACAAAGTATGCATGGTTAATTTGTGCTCAGCCTCACCGTGAAGAGCTCATCCAAGATCTTTCCAAATGTTGGAAAGATCCACAGATGGGTGTGGTTTATGGTGGTATGATTAGGGAGCTTTTACTCTCATTTATGAAGGCAACTGGACAAAAACCGTtgagtataattttttatagGGATGGGGTAAGTGATGGACAGTTCTACCAAGTTTTGCTGTATGAACTTGACGCCATCCGTAAGGCTTATGCGTCTATGGAACCAAGTTACCAACCTGCAGTAACATTTGTTGTGGTTCAAAAATGGCATCACCCTAGACTGTTCCCAAACAATCACAACAACAGAAACAGCACTGATACGAGTGGGAATATCTTACCTGGTACTGTGGTGGATTCAAACATCTGCCATCCTACTGAATTCGATTTCTATTTATGCAGTCATGCAGGAATTCAGGGTACAAGTAGACCAGCACACTATCATGTCCTCTGGGATGAGAACAATTTCAGTGCAGATGAGATTCAGTCTCTAACTAACAACTTATGCTACACCTATGCAAGATGTACGCGGTCTGTTTCTGTAGTACCTCCAGCATACTATGTTCATCTGGCAGCCTACAGAACTCGATGCTATATGGAACCCGATCATCCAGAGATCACTAAACTCCGAGGTGCAAGATCAAAAGATAGGGCTGTTAGGCCACTTCCTGCATTGAAAGAGAACGTGAAGAATAGATCTAATGAGGCTCAATTGGACACGTTTGTGATGAGGGCATGGAGCTTATGGCGGAAGAGAAATATGCAGCTGTGGGAGAACACTATAGACACAGTGCAGCATGTGGTTGTCTGCGCGAATCAAACTCTCCAAGCCTGGAGACACGCAAACAGCACTGCTGTTCACAGACCAGCATCAGTGCCGCAACATCGACAGCAGCAGGTTCGCTGGCAGCCAACGCCACCTACTATTTTCAAATGCAACATCGACGAAACTGTTTATACACATGATAATAAGGACAGCTTGGGTACAATGAAATTTTTATCCATTCATTGTCCTTCTCTCTATTGA 4734 0.3811 MSDPKHDVFLSFRGEDTRDNFTSHLYAELRRKNIKTFIDYSLERGDEIFPTLYRAIEESKIYVIILSEHYASSSWCLDELTEILKCKERYGREVIPVFYKKASLTQIAGLSGWDSQVTRPESILVTEIVKDILKKLNSCFIGDYEGMPGIDMHVEQIQSLLLLELPTVRITGIWGMGGIGKTTIASAVFEKLATQFSSKIIILNVQQEIERVGLNHLKSKYISKLLGEDITSFEYNLSFDPRLKRIKVLLVFDDVKDSDLLKDLIGTRSNFGQGSRIIVTSRDKQVLENANADNIYHVREMDYQDSLQLFCLFAFKQKQPIKSYVSLSEKVLDYAKGLPSALKVLGSLLYGKTKEVWESQLEKLKKLPDHKIFRLLELTYYGLDDEQKDIFLDIACFYKGEFETLVEQTLGYCGFSARNGMDVLQDRCLIYISEGRVWMHDLIQEMGHEIVRLQCVNDPGKRSRLWKPNYIYDVLSKNEGTDTIQCIFLNTREIKEVQLQAKTFKKMHNLRMLKFCKYSWSDPNVIFHDFHDFHSLYLLSESKVTFHAFPKSFPDHLKLLCWDEFPQRSLPQDFSPKNLVILEMIYSQLRQLWEGDQALPNLKRLNLSYSKELIKVPDLSLSPNIEEVFLSGCKSLVQVYSSSFIDKLNWLCLDDCTELKRLDIRSNILSRSFGSVGLNDCDNLETLLISSRTDEGKYIIWETDSNTHTSINEFCSLDISYCESLTCLPAELLNSKFLKRLCLEGCLKLEELPEIGENMKNLKELNLNKTSIKELPSSLHRLVGLEILSLKSCTKLKIIPSSIGNLSKLLELNLANCASLETFPRSIFKLKLTILNFQGCLMLRTFPEILEPAESFARINLNETAIKELPSSLHHFVGLKELSLQSCTKLKTIPSSIGKLKTLFKLNLSDCVSLETFPSNIFKLKLTELNFQDCSMLWNFPEIPYNIGRLSFLSKLSLQGSSIVNLPESMANISSLKSLDLTDCKQLECIPKLPLNLDMLLAFDCPSIKRVVLNSELQLVSNSKDVIFNIHLTNIEELDATFWSNIGVEAWIKITDDAYRSVFFWFPRSAIPGWFPYRCHGHSITMKEVHRYVCNENMLIGFTVCVVLGHKEMDAMITLGTGFRYNFRFEADGDSYINYHNAPRDYILQKGKNRFFSQDHTFMWKHKLDMANIGNRFVHAQNFTFEIVDEHLRPLSSQSSFTVKECGIYGGYLLQVVASQDWPEVTKYAWLICAQPHREELIQDLSKCWKDPQMGVVYGGMIRELLLSFMKATGQKPLSIIFYRDGVSDGQFYQVLLYELDAIRKAYASMEPSYQPAVTFVVVQKWHHPRLFPNNHNNRNSTDTSGNILPGTVVDSNICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYVHLAAYRTRCYMEPDHPEITKLRGARSKDRAVRPLPALKENVKNRSNEAQLDTFVMRAWSLWRKRNMQLWENTIDTVQHVVVCANQTLQAWRHANSTAVHRPASVPQHRQQQVRWQPTPPTIFKCNIDETVYTHDNKDSLGTMKFLSIHCPSLY 1577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01687 1577 Pfam TIR domain 5 103 IPR000157 GO:0007165
Tsu06g01687 1577 Gene3D Ribonuclease Inhibitor 468 845 IPR032675 -
Tsu06g01687 1577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 394 IPR027417 -
Tsu06g01687 1577 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 781 892 IPR044974 GO:0006952
Tsu06g01687 1577 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 104 IPR044974 GO:0006952
Tsu06g01687 1577 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 879 1005 IPR044974 GO:0006952
Tsu06g01687 1577 SMART till_3 5 135 IPR000157 GO:0007165
Tsu06g01687 1577 Gene3D - 1211 1469 IPR036397 GO:0003676
Tsu06g01687 1577 ProSiteProfiles TIR domain profile. 4 136 IPR000157 GO:0007165
Tsu06g01687 1577 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 111 IPR035897 -
Tsu06g01687 1577 SUPERFAMILY "Winged helix" DNA-binding domain 371 475 IPR036390 -
Tsu06g01687 1577 SMART Piwi_a_2 1145 1436 IPR003165 GO:0003676
Tsu06g01687 1577 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 115 691 - -
Tsu06g01687 1577 SUPERFAMILY Ribonuclease H-like 1216 1437 IPR012337 -
Tsu06g01687 1577 Gene3D - 3 140 IPR035897 -
Tsu06g01687 1577 Pfam Piwi domain 1216 1435 IPR003165 GO:0003676
Tsu06g01687 1577 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 781 892 - -
Tsu06g01687 1577 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 4 104 - -
Tsu06g01687 1577 Pfam NB-ARC domain 152 366 IPR002182 GO:0043531
Tsu06g01687 1577 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 115 691 IPR044974 GO:0006952
Tsu06g01687 1577 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 879 1005 - -
Tsu06g01687 1577 ProSiteProfiles Piwi domain profile. 1216 1436 IPR003165 GO:0003676
Tsu06g01687 1577 PRINTS Disease resistance protein signature 971 987 - -
Tsu06g01687 1577 PRINTS Disease resistance protein signature 335 349 - -
Tsu06g01687 1577 PRINTS Disease resistance protein signature 242 256 - -
Tsu06g01687 1577 PRINTS Disease resistance protein signature 170 185 - -
Tsu06g01687 1577 Gene3D - 300 384 IPR042197 -
Tsu06g01687 1577 SUPERFAMILY L domain-like 528 778 - -
Tsu06g01687 1577 Pfam C-JID domain 1066 1208 IPR045344 -
Tsu06g01687 1577 Gene3D - 143 296 IPR027417 -
Tsu06g01687 1577 Pfam Leucine Rich Repeat 578 597 IPR011713 -
Tsu06g01687 1577 Gene3D Ribonuclease Inhibitor 846 1048 IPR032675 -
Tsu06g01687 1577 SUPERFAMILY L domain-like 711 1039 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01687 Tsu-Chr6 18798353 18810462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01687 1213 1466 Eukaryotic Initiation Factors Gene Family AT5G43810 76.046 5.46e-128 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01687 - - ccaj:109803335 1142.49