Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01671 ATGGATTCATGGAGTTTTGTTCCTGAAGATAAAGGGTATGTTTCTAAAGGTTCAATCTTGGGCTGGGAACTCAAAACCCCATCTAGTTTTTTAGGTCAACAAAACAGTGAAAATGACAACAATCAAGGTTTTGAAGAATTGGGTTTTCATGGAATGTTGGGAAAACAATTgtctaatgttgttgttgttgatgatgatgttgttaatgatgttgttgatgatgttcaTAACAGAAAGATGGATAATGATGTTGTTATGGCTGCACCAAATGCATTTTCTGGAAGAGAACTTTCAAACTCATTAGGAGACACTAATGGATGTAATTCACTCATTGATTTAAAGCTTGGTAGATTTGGTGATCATGGAGATGCAATTGGAACATCATTTTCAAAAGGGACTGCGATTTTATCGTCGTCTGGATCATCGTCTACACCACCTAAGAGGGTGCGGTCTTCGAGTGTTCATTCTCAGGTTTTTTACTGCCAAGTCTATGGTTGTAATAAGGATCTGAGTGGTTGTAAAGATTATCACAAAAGGCACAAAGTTTGTGAGGTTCATTCAAAGACTTCTAAAGTTATAGTCAATGGTATTGAACAAAGATTTTGTCAACAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAATGAACGCCGCAGAAAGCCACAAGTCGGTATTCACTCAGGAAGAGCTGGGAGATTGCTTCAGTCATATAACGATAGCAGATTCCAGGGAAGCATGCTAACATCAGCATCTTTTATATGCCAAGAGATACTCCCCGGTGAGGTTTTGTCTTCTGAGAAATGTGGAACTAGTAATTGGTGGAGGCCTATAAAAGGCGAAGACGGAACTGGAACCGGTTTTCGGCCTCTTTCTTCTATTCCAATTACCAATGCACATCCTCATTCACAAACTCTATTTCCTTCATACAGTAATAAACAATTTCCCTTCCTTCATGAAAACGGAGCTGCATCTGCTACAGGAAGCATGTTCTGCGAAAACAATACTCAATATCCTCATATCCTTGGAGGCTCGATTTCTGGATCACAATCATTATTCCAAGATACTTCCTTAGGAAGCGAGGACTTCAATGTTTTCGAAACAGAATCAACTGTTCAAGGATTATCGGGAGTTTCAGACGGTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCATCAGTAATCCCCATGCCTCGTCCTTTGGTCATTCCAAGCAGCCATTACAGCATAAGTGGAGTGTCAGATAGGTTTCCGTCTGAGTTAAATCCAACAGATGGAAGTCATCTTAGTCCTATATTGATATCCGACAATAATGAAATACATTTCGAAATGGCAAATGGAATTTTCCAAGGGTCTGATTTTGTCAATGTGAAAGATCGTCTTTCTTGTGAAGATGGCACAACCATTGACTTGCTTCAATTGTCAACACAACTTCAGCGTGTCGAACATCAGAGACGAGCCTTGCAAGTGAAGCAAGAAAACGATTCTTCTTGCTCTCTTCGGATTACTTAA 1572 0.3887 MDSWSFVPEDKGYVSKGSILGWELKTPSSFLGQQNSENDNNQGFEELGFHGMLGKQLSNVVVVDDDVVNDVVDDVHNRKMDNDVVMAAPNAFSGRELSNSLGDTNGCNSLIDLKLGRFGDHGDAIGTSFSKGTAILSSSGSSSTPPKRVRSSSVHSQVFYCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGRAGRLLQSYNDSRFQGSMLTSASFICQEILPGEVLSSEKCGTSNWWRPIKGEDGTGTGFRPLSSIPITNAHPHSQTLFPSYSNKQFPFLHENGAASATGSMFCENNTQYPHILGGSISGSQSLFQDTSLGSEDFNVFETESTVQGLSGVSDGGCALSLLSSQSQNSSSQSSVIPMPRPLVIPSSHYSISGVSDRFPSELNPTDGSHLSPILISDNNEIHFEMANGIFQGSDFVNVKDRLSCEDGTTIDLLQLSTQLQRVEHQRRALQVKQENDSSCSLRIT 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01671 523 PANTHER 1 PROTEIN, PUTATIVE-RELATED 31 523 - -
Tsu06g01671 523 Pfam SBP domain 161 234 IPR004333 GO:0003677
Tsu06g01671 523 Gene3D - 151 222 IPR036893 GO:0003677|GO:0005634
Tsu06g01671 523 SUPERFAMILY SBT domain 159 239 IPR036893 GO:0003677|GO:0005634
Tsu06g01671 523 Coils Coil 491 511 - -
Tsu06g01671 523 ProSiteProfiles Zinc finger SBP-type profile. 158 235 IPR004333 GO:0003677
Tsu06g01671 523 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 31 523 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01671 Tsu-Chr6 18409286 18413239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01671 111 513 SBP-box Gene Family AT1G69170 34.975 6.31e-53 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu06g01671 SBP 5.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01671 - - gmx:100777766 715.301