Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01670 ATGGCTTTGTGTAACAAGATTGGAAACCTGTTGAGGCAGGGTGGTTCTCAGAGCAGCCATTCATCCATGCTTAACTACCTTCGCCACATGTCTTCAAGCAAGCTTTTTATTGGAGGTCTTTCTTATGGAGTTGATGACCAATCTCTTAGGGATGCATTTGCAAACTATGGAGAGGTGGTTGATGCAAGAGTTATCACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTTAACTACACCACTGAGGATGCTGCAACTTCAGCACTAGCTATGGATGGCCAGGATTTAAATGGCCGAAGCATTCGTGTGTCTTATGCAACTGATAGACCTTCTCCTGGACCTCGTCCTTCTGGCGGTGGTGGCAGGtatggtggtggtggtaatGGTTTTTCTAACGGCGGCGGCGGTTGGTGA 420 0.4524 MALCNKIGNLLRQGGSQSSHSSMLNYLRHMSSSKLFIGGLSYGVDDQSLRDAFANYGEVVDARVITDRDTGRSRGFGFVNYTTEDAATSALAMDGQDLNGRSIRVSYATDRPSPGPRPSGGGGRYGGGGNGFSNGGGGW 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01670 139 MobiDBLite consensus disorder prediction 106 139 - -
Tsu06g01670 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 104 IPR000504 GO:0003723
Tsu06g01670 139 SUPERFAMILY RNA-binding domain, RBD 29 138 IPR035979 GO:0003676
Tsu06g01670 139 Gene3D - 12 139 IPR012677 -
Tsu06g01670 139 SMART rrm1_1 34 106 IPR000504 GO:0003723
Tsu06g01670 139 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 136 - -
Tsu06g01670 139 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 136 - -
Tsu06g01670 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01670 Tsu-Chr6 18406509 18406928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01670 32 113 Eukaryotic Initiation Factors Gene Family AT1G49760 43.373 4.14e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01670 - - lang:109344110 171.785