Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01642 ATGGTTCCCGTTAAATACAACGGAGAAGCCTATGACCCGTTAGATCCAACTGCAAATATTACCATCAAATGGGATGTCATAGCCTGGACCACAGATGGCTATATTGCTACGGTTTCCATGTACAACTTCCAACAATATCGGCATATTCAAGAGCCCGGATGGACGCTCGGGTGGACATGGGCAAAGGAGGAAGTTATTTGGTACATGCTAGGAAGCCAAGCAACAGAGCAAGGGGATTGCTCGAAATTCCATTCCGGGATTCCACATAGTTGTGAGAAAAATCCAACTGTGGTGGATAAGTTGTCAGGAACACCGTACAATTTCCAAGTTGCCAACTGCTGCAAAGCTGGAGTTTTGAGTTCCCTAGCTCAAGATCCAAGCAATGCAGCAAGTAAGTTTGAGATTACTGTTGGTTCTACTGGAACAACTAGTAAATCCATTCATCTTCCCAAAAACTTCACCCTAAAAACACCCGGTCCTGGTTATACTTGTGGTCCTGCAAAGATTGTAAGACCAACTCAGTATTTTACCAGTGACAAGAGAAGAGCCTCACAAGCTTTCATGACCTGGGACATCACATGCACTTACTCCCAATTCGTGGCGCAAAGGATACCGACATGTTGTGTTTCACTTTCATCATTCTACAATGACACCATAATAAATTGTCCATCCTGTACATGTGGCtgtcaaaacaaaacacaaccCGACAGTTGTGTGAATCCAGACTATCCACATTCATCTTCAATAGTACCATCGTCTGGAAATAATACACCTCTAGTCCGATGTACAAGTCACATGTGTCCGATCAGAGTGCATTGGCATGTGATGGTGAACTATAAAGAGTATTGGAGAGTCAAGATAACAATCAATAATTTCAATTACCAAATGAATTACTCAGACTGGAATGTTGTGATTCAACATCCCAACCTTAATGATCTTTCTCAAATTTACAGCTTCAACTATAAACCGCTTAATCCATACGGAGACATAAATGATACAGGTATATTTTGGGGAATAAAATCGTTCAATGATATTCTTTCTTCAGCTGGACCATTTGGATATGTGCAGTCTGAGATATTGTTAAAGAAAGACAAGTCTACTTTTACAATGGATCAGGGATGGGCCTTTCCAAGGAGGATTTATTTCAATGGGGATTACTGTGTTATGCCTCCTCCTGATGTTGTTCACGTCCTTGAGTCAAAGGGTATCAAGATGGTTCCTTTCAAACTGAATTACACAGTTGATTTAGTTCAAGGTATATTAAATTTCGCAATGGATGTTGATATGTTGGCTCACTTTGATCAGTGGCAGTGCTCAGGGGAGGATAATGTGTATGAAGCCCAAGATCAGTGGCATACTGAACTACGTCGTGCTCACTTAATTCCAGCAGTGGactatatataa 1404 0.406 MVPVKYNGEAYDPLDPTANITIKWDVIAWTTDGYIATVSMYNFQQYRHIQEPGWTLGWTWAKEEVIWYMLGSQATEQGDCSKFHSGIPHSCEKNPTVVDKLSGTPYNFQVANCCKAGVLSSLAQDPSNAASKFEITVGSTGTTSKSIHLPKNFTLKTPGPGYTCGPAKIVRPTQYFTSDKRRASQAFMTWDITCTYSQFVAQRIPTCCVSLSSFYNDTIINCPSCTCGCQNKTQPDSCVNPDYPHSSSIVPSSGNNTPLVRCTSHMCPIRVHWHVMVNYKEYWRVKITINNFNYQMNYSDWNVVIQHPNLNDLSQIYSFNYKPLNPYGDINDTGIFWGIKSFNDILSSAGPFGYVQSEILLKKDKSTFTMDQGWAFPRRIYFNGDYCVMPPPDVVHVLESKGIKMVPFKLNYTVDLVQGILNFAMDVDMLAHFDQWQCSGEDNVYEAQDQWHTELRRAHLIPAVDYI 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01642 467 Pfam COBRA-like protein 34 197 IPR006918 GO:0010215|GO:0031225
Tsu06g01642 467 PANTHER COBRA-LIKE PROTEIN 7 412 - -
Tsu06g01642 467 PANTHER PROTEIN COBRA 7 412 IPR006918 GO:0010215|GO:0031225
Tsu06g01642 467 PIRSF COBRA 1 426 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01642 Tsu-Chr6 17938301 17942261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01642 9 402 COBRA Gene Family AT3G02210 67.003 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01642 - - gmx:100815779 664.84