Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01641 ATGgaaaatcaccaaaaccaaaccaaaaaccCAGACCAAGACCTagacaacaaacaacaacaccaaGAGGGTTGGGGCACGTGGGAAGAGCTTTTACTAGCGTGCGCCGTCAACCGCCATGGCTTCAAAGACTGGAACACCGTTGCCATGGAGGTTCAGTCCAGAACCAACCGCCCTACGCTCCTCGCCACCGCACACCACTGCGAACAAAAATTTCACGATCTAAACCGTAGATTCACAGACGACGTTCCTCCACTGCAACAGAATGGAGACCTCGCCGACGTTGATTCCGATCATGTTCCCTGGCTTGAGAAATTGCGTAAACAACGTGTTGCTGAGCTCCGTCGTGATGTCCAACGCAGCGATGTCTCCATTTTgtCGTTGCAGTTGCAGGTGAAGAAATTAGAGGAAGAGAAAGGGAAAGAGAATGACGGAGAAGAAGATAATAAACCAGATCTGGCGGTTACCGGCGAGGAACAGCACCCTGAAAATGAAAAAACCGGTGGAGAAATGGAGGAAGCTGAACCGGCTAATTCTGAACCGGATATTCGCCGGCTTGATGAAAGCACAACTAATACTGATAAACTGTTACCAACAACTGGAGATGAATCGGACCGGGACAATCAATCGGTTAATGAGTCTAACTCAACCGGTTCGAGGTTTGATGCAGCGAAAACCGGTGATGTAGATGTAAAGTTAGGTACCGGTCCGGTTCATATTAAATCCGGTCCAAACGAGCCGGTTCAAACCGGGAGGAAGAAAAAATCCATTGAGGAAGAATCAAATAACGGAAGCTATGATAACGAGGCTAAAGTTTTAACGTGCGAGTCGGTGCCTCCGAGTGAGGAGAGGAAAGTGGAAGGTGAATCGTCCGAGTTACATGACTCGGTGACTCGCTCGGAGGAGACAGGGACGCGAGAGAGTAGTGAGGTGCAGAGTTCTTCGAGTTTGTCGAAAACGAGGAAGACACGGCGGAGGAGAGATGTTACTGGTGGAGATGTGGTGCCGGGGAATGAGGACGTGGCAATGGTGAAATCAGAACCGTTGGTTGGTGTGTTGGAAATGATCAAAAGACATGAAAAATTTCCATTGTTTGAACGGCGTCTTGAAAAAAACCAGGATTTGGATAGATACAAAGACATTGTGAGACAGCACCTGGACTTGGAAACGATACAATTGAGACTCCAAAAAGGTCACTATTCCTCATGCACTAGCTCATTCTTCCGCGacctcctcctcctcttcaCGAATGCCACTGTGTTCTTCCCTCGCAATTCATCCGAATCACGGGCTGCACATCAGCTGCAACACATGGTTATTGTCGAGATGAAAAGCTCCAGCCAAACGCAATCCGACCCTATCTCTCAGAAGACCGATTCACTCCCTCCAAAAGCTGCTCCTATATTAGTTTGCCGCAAACGCAGTGTAATCTCAACTAAGCCTTCCGCGACCACCTTGAGCCAAAAGGTTGATCACCAACCCATCATCAATGTTAAGAAGGAAAGGCCATCTTCTGATGCTAAACCAACCTTGAAACCAAGTTCTTCTGAGACAGATGAAGAGGAGCCTCCTATGGCTAGAGAAAAGCCTGTAACTGGAGCCAGAAGCAGAAGAAGCAACAAGAACCTCAACAGCAACACCGACAACAAGAAACCACCCTCTAACTCCACTCCTAAAACAGTTTCCTCGGCATCCAAGCTTGCCGAGACCCCAAAACTAGAGAAGAAGAATGCTGCTGCCGATTTCTTGAAGAGAATAAAGCGAAATGCTTCTGTGGAGGTGGTGAGAAGCagtggtggtggaggaggaggTAGTAGTGGCAGCAGTAAGGGTGGTGGAGGTAGTGCTAATATGAAAGAGCAGAAGAAAGTAGTGAATAGTGGAAAGGGtgagaaagggaaagaaagacCTTCAAGGTATAACGATGGAGGAGAGTCGGGGAATAAGAGGAATAAGAATATTGATAACTCCAGGAGGAATGTTGGAAGACCTCCAAAGAAAGGAGCAGAGACCAATGTTGTTAGTACAAAGCGTGGAAGGGAAAGTAGTGCAAGTGGTAGCAAAGATAAGCGACCGAAAAAACGTTCAAAGAAATGA 2097 0.4506 MENHQNQTKNPDQDLDNKQQHQEGWGTWEELLLACAVNRHGFKDWNTVAMEVQSRTNRPTLLATAHHCEQKFHDLNRRFTDDVPPLQQNGDLADVDSDHVPWLEKLRKQRVAELRRDVQRSDVSILSLQLQVKKLEEEKGKENDGEEDNKPDLAVTGEEQHPENEKTGGEMEEAEPANSEPDIRRLDESTTNTDKLLPTTGDESDRDNQSVNESNSTGSRFDAAKTGDVDVKLGTGPVHIKSGPNEPVQTGRKKKSIEEESNNGSYDNEAKVLTCESVPPSEERKVEGESSELHDSVTRSEETGTRESSEVQSSSSLSKTRKTRRRRDVTGGDVVPGNEDVAMVKSEPLVGVLEMIKRHEKFPLFERRLEKNQDLDRYKDIVRQHLDLETIQLRLQKGHYSSCTSSFFRDLLLLFTNATVFFPRNSSESRAAHQLQHMVIVEMKSSSQTQSDPISQKTDSLPPKAAPILVCRKRSVISTKPSATTLSQKVDHQPIINVKKERPSSDAKPTLKPSSSETDEEEPPMAREKPVTGARSRRSNKNLNSNTDNKKPPSNSTPKTVSSASKLAETPKLEKKNAAADFLKRIKRNASVEVVRSSGGGGGGSSGSSKGGGGSANMKEQKKVVNSGKGEKGKERPSRYNDGGESGNKRNKNIDNSRRNVGRPPKKGAETNVVSTKRGRESSASGSKDKRPKKRSKK 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01641 698 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 13 698 - -
Tsu06g01641 698 MobiDBLite consensus disorder prediction 624 665 - -
Tsu06g01641 698 SUPERFAMILY Bromodomain 348 445 IPR036427 GO:0005515
Tsu06g01641 698 Pfam Bromodomain 352 432 IPR001487 GO:0005515
Tsu06g01641 698 MobiDBLite consensus disorder prediction 494 535 - -
Tsu06g01641 698 SUPERFAMILY Homeodomain-like 20 57 IPR009057 -
Tsu06g01641 698 MobiDBLite consensus disorder prediction 601 615 - -
Tsu06g01641 698 Gene3D - 350 462 IPR036427 GO:0005515
Tsu06g01641 698 Pfam Myb-like DNA-binding domain 25 56 IPR001005 -
Tsu06g01641 698 MobiDBLite consensus disorder prediction 1 21 - -
Tsu06g01641 698 CDD Bromodomain 352 439 - -
Tsu06g01641 698 CDD SANT 25 56 IPR001005 -
Tsu06g01641 698 MobiDBLite consensus disorder prediction 569 591 - -
Tsu06g01641 698 Coils Coil 118 138 - -
Tsu06g01641 698 MobiDBLite consensus disorder prediction 444 466 - -
Tsu06g01641 698 MobiDBLite consensus disorder prediction 278 306 - -
Tsu06g01641 698 MobiDBLite consensus disorder prediction 137 191 - -
Tsu06g01641 698 MobiDBLite consensus disorder prediction 251 265 - -
Tsu06g01641 698 MobiDBLite consensus disorder prediction 1 19 - -
Tsu06g01641 698 PANTHER BNAC04G22430D PROTEIN 13 698 - -
Tsu06g01641 698 SMART bromo_6 338 448 IPR001487 GO:0005515
Tsu06g01641 698 MobiDBLite consensus disorder prediction 480 698 - -
Tsu06g01641 698 SMART sant 21 78 IPR001005 -
Tsu06g01641 698 MobiDBLite consensus disorder prediction 137 337 - -
Tsu06g01641 698 MobiDBLite consensus disorder prediction 536 567 - -
Tsu06g01641 698 Gene3D - 15 74 - -
Tsu06g01641 698 ProSiteProfiles Bromodomain profile. 357 429 IPR001487 GO:0005515
Tsu06g01641 698 MobiDBLite consensus disorder prediction 444 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01641 Tsu-Chr6 17929449 17937013 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu06g01641 Bromodomain 5.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01641 - - adu:107458545 772.311