Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01626 ATGGAGCTTGGTTTAAGCTTAGGAGACTCTTCAAAGCCTCTAATTGGGTTGTTAATGGAAAAGCATCCTCATGAATCTTCCAAAGAACTTGGTTTAGGCTTCAACACCACTTTATCAATTGGTCCAATCAACACTGCACAAAGAGatcaacttcaacaacaacaacaagatgAAAAGACTAAAAGGGAcaccaacaacaataacaataacaacaacagaACTGAAAATCCAAACTTTGTATTGCATCAACTTGATCTTCTTCCTCAACTCTCATTACCATGGCATCCTCCTTCTCAAAATGTTGGTAGATTATTATCAACTGAGTTTGGTGGTTCTTCAAGTGGCTTGGATGTGAACGTGGTTCCACCGGTTACAACGGTTATTATGGCGGATGATGAGGCGGCGCTTTCATCATCACCTAATAGCGCAGCGTCTTCTTTTCAGATGGATCTCTGTATATACAGTCGAGGAGGAAGTGGCGGCGGCGGTGGTGGGAGTTTGAGTGGCTCAGGAGGGAACAAGAGAGAGTTTTCTGATGGTGAAGGTTATGATCAAAGAAACTCTTCAAGAGTaagtgatgaagatgataacTGTGGTGGTGGAAACAAAAGGAAGAAGCTTAGACTCTCAAAAGATCAATCTGCTTTTCTTGAAGAGAGTTTTAAAAAACACCATACTCTTAATCCTAAACAAAAATTGGCTCTTGCAAAACAACTCAATCTTCGACCTCGCCAAGTAGAAGTCTGGTTCCAAAACAGAAGAGCAAGGACTAAGTTAAAGCAAACAGAAGTAGACTGTGAATATTTAAAGAGATGTTGTGAGACATTAACAGAAGAGAATAGGAGGCTACACAAAGAACTTCAAGAATTAAGAGCTTTAAAAACTTCAAATCCATTTCAAATGCAATTACCAGCAACTACTTTAACTATGTGTCCTTCATGTGAACGTGTAGCAACAAATTCTACAGCAACTTCCTCTGTCACTACAAATACTACAATCAATGCTAATAACAAAACAAGTGATGATTCCACTTCAAAGGTCAATATTGGATTCCCTTTTGGAAAACCAAGGTTTCAAACACAACAtcatgaattgaattga 1101 0.3606 MELGLSLGDSSKPLIGLLMEKHPHESSKELGLGFNTTLSIGPINTAQRDQLQQQQQDEKTKRDTNNNNNNNNRTENPNFVLHQLDLLPQLSLPWHPPSQNVGRLLSTEFGGSSSGLDVNVVPPVTTVIMADDEAALSSSPNSAASSFQMDLCIYSRGGSGGGGGGSLSGSGGNKREFSDGEGYDQRNSSRVSDEDDNCGGGNKRKKLRLSKDQSAFLEESFKKHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFQMQLPATTLTMCPSCERVATNSTATSSVTTNTTINANNKTSDDSTSKVNIGFPFGKPRFQTQHHELN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01626 366 CDD homeodomain 203 261 IPR001356 GO:0003677
Tsu06g01626 366 SMART halz 260 303 IPR003106 GO:0006355|GO:0043565
Tsu06g01626 366 Pfam Homeobox associated leucine zipper 260 294 IPR003106 GO:0006355|GO:0043565
Tsu06g01626 366 MobiDBLite consensus disorder prediction 177 209 - -
Tsu06g01626 366 Gene3D - 198 265 - -
Tsu06g01626 366 Pfam Homeodomain 203 258 IPR001356 GO:0003677
Tsu06g01626 366 Coils Coil 273 296 - -
Tsu06g01626 366 MobiDBLite consensus disorder prediction 47 76 - -
Tsu06g01626 366 MobiDBLite consensus disorder prediction 160 209 - -
Tsu06g01626 366 ProSitePatterns 'Homeobox' domain signature. 235 258 IPR017970 GO:0000981|GO:0006355
Tsu06g01626 366 ProSiteProfiles 'Homeobox' domain profile. 200 260 IPR001356 GO:0003677
Tsu06g01626 366 SUPERFAMILY Homeodomain-like 192 261 IPR009057 -
Tsu06g01626 366 MobiDBLite consensus disorder prediction 334 366 - -
Tsu06g01626 366 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 344 - -
Tsu06g01626 366 PANTHER - 1 344 - -
Tsu06g01626 366 SMART HOX_1 202 264 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01626 Tsu-Chr6 17565430 17568011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01626 169 317 Homeobox Transcription Factor Family AT4G37790 67.308 9.80e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu06g01626 Homeodomain 9.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01626 K09338 - gmx:100805312 411.379