Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01608 ATGGAGCTTGATTTAAATGAGAAGCCTGTGGACCGAATTGAAGAGCAACTGAAACGGATTGAAGCCATTTTCAAGGCGAAACAAACTCAGAAGCGGCAAAAATGTTACACTCCAATTCAGATAACTAATTTTGCAGGAGAATTGTTAACAAAAGCTGATAATGTTCAAGATGATGAAAGCAAGGTGACCAAGGAAGAAGTTGAAGGAGGGACATCGGAATGCGAGAAAACACGTAAAAGAAAGGCTTCCTGCTTAGTTGCGAAGGCGTTGGGGATGGAAACATCTACAGACGGTGTTGCAGGCCGCACTAGAAACTTCTTTGATTGTAATATATGTTTGGAGATGGCAAATGATGCTGTATTGACTTGCTGTGGTCACTTGTTTTGTTGGGAATGCTTCTATGAGTTGCCATATGCGTATTCAAATGCCAAAGAGTGTCCTGTGTGTGCAGGAGAAGTTGTTGACACCGATGTCATACCGGTATATGGCAACGGAAGGGTTGATGATAGTGGTCAGTTTGAATTGAAAGAATCTGATTTAAGTGTTCCTAGTCGGCCGCACGCACCTAGAGTTGAGAGTACTAGGCAGCGCCGTAGAAGACGCACCATTACTTCTACAAACCATGATTTGTCTTTGTTTGGTAACTTTGGCGGATTGGAAGAGCCTGATCCGTTGCAACTCCCGATTATTTCTAATGATTGA 702 0.4288 MELDLNEKPVDRIEEQLKRIEAIFKAKQTQKRQKCYTPIQITNFAGELLTKADNVQDDESKVTKEEVEGGTSECEKTRKRKASCLVAKALGMETSTDGVAGRTRNFFDCNICLEMANDAVLTCCGHLFCWECFYELPYAYSNAKECPVCAGEVVDTDVIPVYGNGRVDDSGQFELKESDLSVPSRPHAPRVESTRQRRRRRTITSTNHDLSLFGNFGGLEEPDPLQLPIISND 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01608 233 Pfam Zinc finger, C3HC4 type (RING finger) 108 153 - -
Tsu06g01608 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 7 205 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tsu06g01608 233 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 7 205 - -
Tsu06g01608 233 SUPERFAMILY RING/U-box 101 159 - -
Tsu06g01608 233 ProSiteProfiles Zinc finger RING-type profile. 109 149 IPR001841 -
Tsu06g01608 233 Coils Coil 10 30 - -
Tsu06g01608 233 MobiDBLite consensus disorder prediction 178 201 - -
Tsu06g01608 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 163 IPR013083 -
Tsu06g01608 233 SMART ring_2 109 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01608 Tsu-Chr6 17212983 17213684 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01608 100 204 C3H Transcription Factor Family AT3G58030 50.943 6.32e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01608 K10666 - gmx:100780540 182.57