Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01582 ATGGATTGCCGATTTGAGACCGCAGAAACTCGAAGGAACAAGTGTGCAGCATGTTACAGGCAGTTCAACAAGGTGGAGCACCTAGTGGATCACATCAAGATCTCTTATCATTCTGTTCATGAACCAACTTGTGGCGTTTGCCGGAAACATTGCAGATCCTTTGAATCTCTAAGGGAACATCTTATAGGTCCATTGCCAAAACAAGAATGCAGAGAAATCTTTGCCAACCGAGGGTGCAAGTTTTGCTTGAAAGTCCTTGACAGCCCTAACTCTCGCAGGATCCACCAACAAAAGTGCCAACTTAATGGATTAAATGGAATATGTGGTCGCTTTTCAAACTTGGGAATTCGCGATAATTTGACAATTGGTGGAGGAAGAGGACCACAAGTAGTTGCACTAGCTTGTAAAATGGTTGGAGGAGGAAGTGATGGCTCATTGGATCTATGTGCAAGAGTTTGCTTAATAGATGAGAATGAGAACATCATCTTCCATTCTTATGTCACTCCACCAATTCCAGTCACAAATTACAGGTATGAGACAACAGGTATTAGACATGAATACTTAAGGGATGCAATGCCATTGAAACTAGTTCAAAGGAAAATTCAAGAGTTCCTTTGTAATGGAGAACCTATGTGGACAATTCGTTCAAGAGGAGGAAAAGCTAGGATTCTTGTGGGTCATGGTTTAGATCATGACCTTGCTTCTTTGCAAATTGAGTATCCAACACCAAAAATAAGgGACACTGCAAAATACCCTCCCCTCATGAAAACAAGCAAGCTCAGCAATTCACTCAAATACTTAACACAAGCATATCTTGGGCAAGTATCATCtccatttt 838 0.4093 MDCRFETAETRRNKCAACYRQFNKVEHLVDHIKISYHSVHEPTCGVCRKHCRSFESLREHLIGPLPKQECREIFANRGCKFCLKVLDSPNSRRIHQQKCQLNGLNGICGRFSNLGIRDNLTIGGGRGPQVVALACKMVGGGSDGSLDLCARVCLIDENENIIFHSYVTPPIPVTNYRYETTGIRHEYLRDAMPLKLVQRKIQEFLCNGEPMWTIRSRGGKARILVGHGLDHDLASLQIEYPTPKIRDTAKYPPLMKTSKLSNSLKYLTQAYLGQVSSPF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01582 279 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 6 273 - -
Tsu06g01582 279 Gene3D - 127 277 IPR036397 GO:0003676
Tsu06g01582 279 PANTHER OS02G0709000 PROTEIN 6 273 - -
Tsu06g01582 279 Pfam Exonuclease 147 273 IPR013520 -
Tsu06g01582 279 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Tsu06g01582 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Tsu06g01582 279 SMART exoiiiendus 129 279 IPR013520 -
Tsu06g01582 279 SUPERFAMILY Ribonuclease H-like 143 272 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01582 Tsu-Chr6 16841961 16843930 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01582 1 273 C2H2 Transcription Factor Family AT3G27970 75.540 1.41e-158 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01582 - - gmx:100813973 499.204