Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01572 ATGACGACGGCGATCACGGCGGCGGAATCAGACCTAAAAACATACTGGTGTCACGAATGCGATATGAGCGTCTCTCTAACTTCTTCCTCAACTCCCTCACCTCTCCTTTGTCCTCATTGTCACACTCACTTCCTCGAACTCATGGACTCACCTTTCTCCCAAAACGACGCCGAATCAACTTCTTCCTTATTCGACGTCGTTTTTCAAGACGCACTTTTACTACTCACACCTCCTCCAACTAAACCACGCACCGAAATACTAATCCCTATAATAACCGTCACACAAACTCTTCTTACTCTTCTCGATCCAAACGGTGTCGTTTTATGTGCGGTTTGTAAAGAAACGATTTATGTTGACGAAGAAGCGAAGCAGCTTCCTTGTGATCATCTTTATCATAATGATTGTATTACTCCGTGGCTTCTTCTTCGATCTTCTTGTCCTCTTTGTCGGTTCCGAATCTCGGAACAAAAAGAGGATGAGAATGATGAAgacgatgaagatgatgatgttgttggtggtggtggtgttgatgTGATGAGGCAGATGGTTGTGCGGTTATCGGAGTTGTCTGAAGATGATTTTTATGGATTGAGAATTACTCTTGATCACATTGCTTCAAGGCATGCTCTGCTTCATTCTAATGCTTCTGGTGCTGGTGAGAATCTTGATGCAGATAGTGAATttggtggtgatggtggtgtAGATGGAGAATCTTGA 717 0.3961 MTTAITAAESDLKTYWCHECDMSVSLTSSSTPSPLLCPHCHTHFLELMDSPFSQNDAESTSSLFDVVFQDALLLLTPPPTKPRTEILIPIITVTQTLLTLLDPNGVVLCAVCKETIYVDEEAKQLPCDHLYHNDCITPWLLLRSSCPLCRFRISEQKEDENDEDDEDDDVVGGGGVDVMRQMVVRLSELSEDDFYGLRITLDHIASRHALLHSNASGAGENLDADSEFGGDGGVDGES 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01572 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 168 IPR013083 -
Tsu06g01572 238 ProSiteProfiles Zinc finger RING-type profile. 109 150 IPR001841 -
Tsu06g01572 238 SUPERFAMILY RING/U-box 104 157 - -
Tsu06g01572 238 Pfam zinc-ribbon 14 48 IPR039525 GO:0061630
Tsu06g01572 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 13 226 - -
Tsu06g01572 238 SMART ring_2 109 149 IPR001841 -
Tsu06g01572 238 Pfam Ring finger domain 109 150 IPR001841 -
Tsu06g01572 238 MobiDBLite consensus disorder prediction 219 238 - -
Tsu06g01572 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 13 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01572 Tsu-Chr6 16684488 16687922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01572 8 70 C3H Transcription Factor Family AT3G60080 47.761 4.49e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01572 K11982 - gmx:100775530 239.58