Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01548 atggCGGACGAAGATGGCTCATCAAGCAGGAAACGAAGGCCAGCAAGAGGACCCGACGCCACCGCTCGGAGCCAAGCATTAGAGCTTCTCAGATCCCGCCGATCCGGCGGGCCCCGATCTGACGCCGCCCTCCCTCAAATCAGGTTAGAAAACCCTATCTACGACACAATCCCCGAGGATGAATACAATGCTCTAGTCGCTAGTCGCCGCGATCAAGCTCGCTCCTTCATCGTTGACGATCAAGGAATCGGTTATGGCGATGAAGGTGAAGAAGAGGATTGGTCTAAAGCTGGTTTCTCCCTCACCGATGATGAATCTGAAGGCGAATCGGAGAAACCTAAACGGAAGAAAGAAGCTTCTCAAACTAAACGctcttcttcgtcttcttctgCTGCTAAACTCTCTGCCGCTGCTGCTATGATGGGCGGACAGAGAGTTTCGTCTATGTTCACTTCCGCTGTTTTCAAGAAGAGTAGAGATAGAGACGATAAGGCTTGCGAGAGCCTCGTAGACGAGGTTCTCAAGGAGTTTGCGCCGGACGAGACTGATAAACTTAGCCGGAGAAAAGTTCAATCCAATTCGTCTTCTATTGGCAATGATGCTATTCGGGTTAATCCCTCTGCTGAAGCTGTAAGAGGTTCTTCTTTTCAACGAAATTCTGTAATTGCAAATGTTGACACTGAATCTGTTAATGTTAATAAGGATAAGGAGAATGGATCTAGGTTAGGATTAGAGCAAAAGTGTGAAGTAGAAGTGAATCGATGTTTGGAAAATGATGAGGAAAAAATGGTGGTGGAACAACCTAATGATTTCCCTTCTTTAAGTAATGGGGATTTGGTTGAAGAGAAAGCGGTGAAGGCGAAAGAGGATGAAATGGAAGCAAAACCTGTTATTAAAAAGGAGGGTTTCACTTTGAATGCGAAAGTTAATCAAGAGGTGGTGGATCCAAAGTTGTGTGCTACTGTTGGTTGGCAGGCAGCGAGGAGCGGTGCTGGTGGAGGTGGGGAGACAAACATTGCCGATTCGAATAATCAACAACATTCCGAGTTCAATTTGGAGCCGGAGGGATCACTGCCTTTCTACATACTTGATGCTTATGAGGAGTATTATGGAGCCAATATGGGTactctttatttatttgggAAGGTCAAAGCAGGGAATTTGTATCAGAGTTGCTGTGTTGTTGTGAAGAACATGCAAAGATGTGTGTATGCAATTCCAAGTCACCCTTTGCATTCCATTGATGAGATGATAAAGCTTGAGAAAGATGTCCAAGAGTCTCGAATTTCTCCTGCAGATTTCCATAAAAAGCTTCAAGATGCAGTATCTGATACAAAGAATGAGGTAGCAAAACATCTGGTGGATTTGGGCGTTTCTACCTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGAACGATCTGACATTCCTGCAGGTGAAAATTATGTTGTGAAAATAAATTATCCATTCAAGGATAAAGCACTTCCAGTAGACCTCAAAGGAGAAAGTTTCTGTGCTCTTCTTGGAGCTCGAAGCAGTGCACTTGAGCTATTTCTGATTAAAAGAAAGATTAAGGGGCCTTCATGGCTACAAGTTTCAAACTTTACTACCTGCTCAGCTTCCCAAAGGGTCAGCTGGTGCAAATTTGAAGTGACTGTTGACTCTCCTAAAGACGTCAGggtttcttcttcatcttcctcaaaaATCACACTTGTGATTCCTCCCGTGGTTGTCACGGCGATAAACTTGAAAACCACGATAAATGAAAAACAGAACATAAATGAAGTTGTATCTGCATCTGTTGTCAGTTGCAATATGGTTAAGATCGACACTCCTATGCTGGCTTCAGAGTGGAAAAGACCTGGAATGCTGACCCATTTTACTGTTATTCGCAAACTTGATGGGAATATATTTCCAATGGGATTCAATACGGAGGTCACAGACAGAAACACAAAAGCGGGGTCAAATGTTCTTTGTGTTGAAAGCAGtGAAAGAGCTTTGTTAAATCGTCTAATGTTACAATTACACAAGATGGATAGTGATGTTCTGGTTGGACATAATATTTCTGGCTTCGATCTGGATGTTCTTCTCCACAGATCTCAGGCTTGCAGAGTACCGAGCAGCATGTGGTCTAAACTGGGTCGTCTTAACCGTTCTACGATGCCTAGGCTGGATAGAAGAGGCAAAACATTTGGTTTTGGAGCTGATCCTGCTATCATGTCTTGTGTTGCCGGTCGGCTTCTTTGTGATACTTATTTGTGCTCCCGTGATCTATTAAAGGAGGTTAGCTATTCTTTAACCCACCTTGCAAAAACACAGCTGAACCAGTCTCGGAAGGAAGTTGCTCCGCATGATGTTCCAAAAATGTTTCAAACTGCAAAATCCCTGATGGAGCTAATTGAATATGGTGAAACGGATGCATGGTTGTCCATGGAACTCATGTTTTATTTGAGTGTCCTTCCGCTCACACGCCAGTTGACTAATATAAGTGGCAATCTGTGGGGGAAAACTCTTCAGGGTGCCCGGGCACAGAGGGTGGAGTATCTTTTGCTGCACGAGTtccataaaaagaaatatattgtCCCAGACAAGTTTTCCAATAAcgcaaaagaaacaaagttgACAAAACGCAGAGTAACTCATGGCGTCGACAGTGGCAACCTTGATGATGCTGATATTACCGATGCAAACTATCATAATGATGCTTCTGAAAGTGATTACAAGAAAAGCAAAAAGGCTGCTTCATATGCTGGAGGACTGGTCTTAGAGCCTAAGAAGGGTCTATACGACAAATATATATTACTTCTGGACTTCAACAGTCTATACCCTTCTATCATTCAGGAATATAATATCTGCTTCACAACTGTTGAAAGATCTACAGATGAATCTTTTCCTCGTCTGCCATCCAGTAAAACAACGGGAGTCTTGCCAGAGTTGCTGAAAAAGCTTGTTAAGTGGAGGCGAGATGTAAAGACATGGATGAAAACTGCATCTGGTCTTAAACGTCAGCAACTGGACATTCAGCAGCAAGCACTGAAGCTTACTGCAAACAGtATGTACGGATGCCTGGGATTTTCCAATTCAAGATTTTATGCAAAGCCGTTGGCTGAGCTCATAACCCTACAAGGAAGGGAGATTCTACAAAGTACTGTTGATCTTGTTCAAAATAACTTGAATTTAGAGGTGATCTATGGTGATACTGATTCAATAATGGTTTACAGTGGGCTAGATGATATTGCAAAAGCAACTTCAATATCTAAGAAAGTCATTCAAGAGGTAAATAAGAAATATAGGTGCTTAGAAATTGATCTTGATGGTTTGTATAAGAGGATGCTACTtctcaagaaaaagaaatatgcagCAGTTAAGGTGCAGTTTAAAGATGGCACCCCATATGAGGTTATTGAACGCAAAGGTCTTGATATTGTCCGCCGTGACTGGAGCTTATTAGCGAAAGATTTAGGAGATTTTTGCCTGACTCAAATTTTGTCGGGAGGGTCATGCGAAGATGTCGTCGAATCAATTCACAACTCTCTCGTGAAGGTACAAGAAGAAATGAGGAATGGACAAGTAGCACTGGAAAAATATGTCATCACAAAGACATTGACTAAACCACCCGAAGCATATCCTGATGCCAAAAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACACCTCTGGTTGCTCTGTTGGTGATACAATCCCTTATATAATTTGCTGTGAACAGGGTGGTAGTTCAGGCAGTGCGACGGGAATTGCTCAACGTGCCAGACATCCTGATGAACTAAAACAAGAACAGGGGACATGGCTAATTGATATTGATTACTATTTGTCACAACAGATTCATCCTGTCGTATCACGTCTTTGTGCATCAATTCAGGGCACAAGCCCCGAAAGACTGGCTGATTGTTTAGGGCTTGACACATCAAAGTTTCAACATAAATCAAGTGAAGCTGTAAGTGACGATCCTACAAGCTCACTCTTGTTTGCTGGTGATGATGAGGAGAGGTATCGGGGATGTGAGTCGTTGGTCTTGTCATGCCCCAGCTGCTCTGGTACATTTGATTGCCCACCTGTGTTCAAGTCTATTTGTATGCTGGCAAATGAAAAGCCAACCAGCTTAGGTGCGGAGGAATCTGACTTCAATTTCTGGCGCAAGCTGTGCTGTCCCAAATGCTTTGAAAACGGTGTTGGTAGAATTTCTCCTGCAATGATAGCTAATCAGGTCAAACGGCAAGCAGAGAAGTttgttttaatgtattataGCGGTTCACTAATGTGTGATGATGAAATGTGTAAGCATACAACACGAAGTGTCAGCTTTCGTTTGGTTGGTGATTCTGAGCGGGGAACTGTTTGTCCAAATTATCCTCGCTGCAACGGGCATCTTAATAGAAAGTACACTGAAGCCGACTTGTACAAGCAGCtctcatatttttgtcatgtgTTTGATACTGTTTGTTGTATAGAAAAGATGGAGGCAAAGTCTAGGATACCGATAGAGAAGGAGTTGATCAAAATTAGGCCAATAGTTAGTCTTGCTGCATCAACAATACAAAAGATCAGGGACCGTTGTGCCTTTGGGTGGGTGAAGCTGCAGGATCTGGTTGTTACAATTTAA 4638 0.4166 MADEDGSSSRKRRPARGPDATARSQALELLRSRRSGGPRSDAALPQIRLENPIYDTIPEDEYNALVASRRDQARSFIVDDQGIGYGDEGEEEDWSKAGFSLTDDESEGESEKPKRKKEASQTKRSSSSSSAAKLSAAAAMMGGQRVSSMFTSAVFKKSRDRDDKACESLVDEVLKEFAPDETDKLSRRKVQSNSSSIGNDAIRVNPSAEAVRGSSFQRNSVIANVDTESVNVNKDKENGSRLGLEQKCEVEVNRCLENDEEKMVVEQPNDFPSLSNGDLVEEKAVKAKEDEMEAKPVIKKEGFTLNAKVNQEVVDPKLCATVGWQAARSGAGGGGETNIADSNNQQHSEFNLEPEGSLPFYILDAYEEYYGANMGTLYLFGKVKAGNLYQSCCVVVKNMQRCVYAIPSHPLHSIDEMIKLEKDVQESRISPADFHKKLQDAVSDTKNEVAKHLVDLGVSTFSMAPVKRKYAFERSDIPAGENYVVKINYPFKDKALPVDLKGESFCALLGARSSALELFLIKRKIKGPSWLQVSNFTTCSASQRVSWCKFEVTVDSPKDVRVSSSSSSKITLVIPPVVVTAINLKTTINEKQNINEVVSASVVSCNMVKIDTPMLASEWKRPGMLTHFTVIRKLDGNIFPMGFNTEVTDRNTKAGSNVLCVESSERALLNRLMLQLHKMDSDVLVGHNISGFDLDVLLHRSQACRVPSSMWSKLGRLNRSTMPRLDRRGKTFGFGADPAIMSCVAGRLLCDTYLCSRDLLKEVSYSLTHLAKTQLNQSRKEVAPHDVPKMFQTAKSLMELIEYGETDAWLSMELMFYLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHEFHKKKYIVPDKFSNNAKETKLTKRRVTHGVDSGNLDDADITDANYHNDASESDYKKSKKAASYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSTDESFPRLPSSKTTGVLPELLKKLVKWRRDVKTWMKTASGLKRQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMVYSGLDDIAKATSISKKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDIVRRDWSLLAKDLGDFCLTQILSGGSCEDVVESIHNSLVKVQEEMRNGQVALEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYTSGCSVGDTIPYIICCEQGGSSGSATGIAQRARHPDELKQEQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDTSKFQHKSSEAVSDDPTSSLLFAGDDEERYRGCESLVLSCPSCSGTFDCPPVFKSICMLANEKPTSLGAEESDFNFWRKLCCPKCFENGVGRISPAMIANQVKRQAEKFVLMYYSGSLMCDDEMCKHTTRSVSFRLVGDSERGTVCPNYPRCNGHLNRKYTEADLYKQLSYFCHVFDTVCCIEKMEAKSRIPIEKELIKIRPIVSLAASTIQKIRDRCAFGWVKLQDLVVTI 1545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01548 1545 Gene3D - 360 559 - -
Tsu06g01548 1545 Coils Coil 1091 1111 - -
Tsu06g01548 1545 CDD POLBc_alpha 909 1313 IPR045846 GO:0003887|GO:1902975
Tsu06g01548 1545 Gene3D DNA Polymerase alpha, zinc finger 1337 1530 IPR038256 -
Tsu06g01548 1545 ProSitePatterns DNA polymerase family B signature. 1065 1073 IPR017964 GO:0000166|GO:0003676
Tsu06g01548 1545 SUPERFAMILY DNA/RNA polymerases 859 1312 IPR043502 -
Tsu06g01548 1545 SMART polmehr3 575 1077 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tsu06g01548 1545 MobiDBLite consensus disorder prediction 1 18 - -
Tsu06g01548 1545 PANTHER DNA POLYMERASE 338 1542 - -
Tsu06g01548 1545 SUPERFAMILY Ribonuclease H-like 355 863 IPR012337 -
Tsu06g01548 1545 Gene3D - 400 526 - -
Tsu06g01548 1545 MobiDBLite consensus disorder prediction 1 51 - -
Tsu06g01548 1545 CDD DNA_polB_alpha_exo 575 826 - -
Tsu06g01548 1545 MobiDBLite consensus disorder prediction 81 141 - -
Tsu06g01548 1545 PRINTS DNA-directed DNA-polymerase family B signature 934 947 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tsu06g01548 1545 PRINTS DNA-directed DNA-polymerase family B signature 1010 1022 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tsu06g01548 1545 PRINTS DNA-directed DNA-polymerase family B signature 1063 1071 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tsu06g01548 1545 Gene3D Palm domain of DNA polymerase 903 1128 IPR023211 -
Tsu06g01548 1545 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 338 1542 - -
Tsu06g01548 1545 Pfam DNA Polymerase alpha zinc finger 1338 1541 IPR015088 GO:0003887|GO:0006260
Tsu06g01548 1545 Pfam DNA polymerase family B, exonuclease domain 390 768 IPR006133 -
Tsu06g01548 1545 MobiDBLite consensus disorder prediction 181 201 - -
Tsu06g01548 1545 TIGRFAM pol2: DNA polymerase (pol2) 53 1295 - -
Tsu06g01548 1545 Pfam DNA polymerase family B 834 1297 IPR006134 GO:0000166|GO:0003677
Tsu06g01548 1545 Pfam DNA polymerase alpha subunit p180 N terminal 27 94 IPR024647 -
Tsu06g01548 1545 Gene3D - 1141 1327 IPR042087 -
Tsu06g01548 1545 MobiDBLite consensus disorder prediction 89 122 - -
Tsu06g01548 1545 Gene3D - 575 887 IPR036397 GO:0003676
Tsu06g01548 1545 Gene3D Helix hairpin bin 973 1024 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01548 Tsu-Chr6 16389109 16401361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01548 5 1543 Core DNA Replication Machinery Family AT5G67100 59.729 0.0 1838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01548 K02320 - gmx:100798779 2233.76