Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01540 ATGTCAGATTCATTTCTCTTCGATATTGCTGATTCGCTTCTAGGAAAGCTTGCTTCTTATGCACATGAAGAAGCTTCAAAAGCCTGTGGTGTGTATGAAGATCTACAAGGGATCAAAGCCACTTTGTCAATAGTAAAATGTTTTCTATTGGATGCTGAAGATAAGAAAGACCAAAACCATAGCCTGCGCGAATGGTTGAAACAAATTCAAAACATCTGCTGCAATGCTGAAGACATGTTGGATGATGTTCAGTGTCAAAACTCGCGAAACCAACTTGTTCAATCTTCTGGAAGCAAAAGAATGAAGGTAGGACACTTACTTTTTTCGCCTATTTACCGTTGTAGGATTGCTCATCGAATCAAAGATGTTAGAGATAGTTTGGATAAGGTAGTAGCTGATGGGAATAAGTTTGGTCTTGAGAGAATGGATGTTAGTGTCGAAAGGAGAGAAATGACTTATTCTCATATTGATGCTTTAGATGTTATAGGAAGAGATAATGAAAAGGAAGAAATTATCGAGTTCTTGATGCAAACTTGTGGTCGCGGTGAGGATGGTGATAAAGGTCTATGTGTGATTCCAATAGTGGGAATTGGTGGTTTGGGAAAGACCACACTTGCGAAGTTAGTGTTCAATGATAAGAGAATGGATGAAGTTTTTCAATTGAAGATGTGGGTGTGTGTCTCAAATGATTTTGACATTAGGCGGATAATTATTAAAATCATCAACTCAACTTCAGTTACAACTTCAACGCCGATTTTAGCTCTTGCTCACCAAGAAAACATTGAGCACTTCGAAATTGAGCAGCTAGTGAGTCGTCTTAGACATAAGCTTTCTGGTCAAAAGTTTTTACTCGTCTTAGATGATATATGGAATGTTAACCGTTCAAAATGGATTGAGttaaaagatttgataaaagTTGGTGCAGCAGGAAGCAAAATCTTAGTGACAACACGTAGTAACTCGATTGCTTCAATAATGGGAAATGTTCCGATGTATACTTTAAAAGGTCTTTCTTTGGAGAACTGTTTGtctctctttgtcaaatggGCATTTAACGAAGGCGAAGAAAAAAAGTATCCATATCTATTAGAGATCGGAAAAgatattgttaaaaaatgtcGAGGGATTCCATTAGCAGTAAGAACATTGGGAAGTTCACTGTATTCAAAGTATGATTTAGATAAGTGGGAGTTTGTAAGAGACTCGGAGATATGGAATTTAAGACAGAATAAAGATGATATTTTACCTGTGCTTAAGTTAAGCTATGATCAAATGTCGTCCTATTTGAGGCACTGTTTTGCATATTTTTCCCTATTTCCCAAAGGTTATCTCTTTACATGTGATGAGATTTGTAATCTTTGGGAAGTATTTGGATTAGTTCGAGCCGCAGATGGAAGTCAAAAGGTAGAGAATATTGCAAGAGAATATATAGATGAGTTACATTCAAGATCATTTCTTCAGGATTTTGAAGACTTTGGCCACACATGCGTTTTCAAAGTACACGATTTGGTGCACGATCTTGCAGTGTATGTTGCAAAAGAGAGGTTTGTAGTGGTAAAATCTTGTAATCAGAATGTACCTGAGCAAGCAATGCATCTATCAATTGTTGAAAATGACTCACTTGATCATGCTATGTTCTCCACGTCGAAAAGCGTGAGAACTATTTTGTTTCCTATCCAAGGAGTGGGCGTTGACAGCAAAACGCTCTTGGATTCATGGATATCGAGATATAGATACCTCCGTTATTTAGATTTAAGTGATTCTTCATTTGAGGCTCTGCCAAATTCAATTTCTAAATTGGAGCTTCTTCGAGTTCTCATACTTTTTCGTAACACCAAAATCAAAAGACTTCCCGATTCCATCTGTGAACTACATAATTTGCAAGTGTTGTCAGTTAGAGGATGCACGGAGCTTGAAGCATTGCCAAAAGGACTAGGGAAGCTAATCAACCTTCGACAGTTATTTATAACTACAAAGCAATTTGTTCTGTCACATGATGAATTTGCAAGCATGAAACATCTTCAAACATTGGGTTTTCATTATTGTGACAATTTGAAGCTTCTCTACAACGTGGCACAACAACTCACTTCCCTTGAAACATTATTTGTTCAATCATGTGGGAGCCTAGAGGCCTTGCCTCTATATAGTTTCCCTAAATTACAAACTTTGTTAATTTCAAACTGTGAGATGTTAAATCGTTGGTTGAATAATGAAAGCCTAATTACTAACTTGAGTTCGATGAAACATCTGTATCTTGGGGACTTTTCAAGTCTTGTGACATTGCCTCGTTGGATTTTAGGTTCTACAAACACATTACTTTCCCTGGTAATTAAAATTTTTCCAGACCTTACGACACTTCCCGAGTGTTTAACAATCATGATTTGTCTTAAGAGGCTGCATATTATTGATTGTCCTCAACTGTCGAGTCTTCCAAGTGACATGCATCGCCTTGCTGTCCTTGAAGATTTAACCATAGATGGTTGCCCTGAATTGTGCCGCAAATGTCAACCACGATTTGGTGAGTACTGGCCCATGATTGCTCATGTCAAACACGTTTTCATCGGAGAACCAACAGGAGAGGAGAACTGA 2589 0.3708 MSDSFLFDIADSLLGKLASYAHEEASKACGVYEDLQGIKATLSIVKCFLLDAEDKKDQNHSLREWLKQIQNICCNAEDMLDDVQCQNSRNQLVQSSGSKRMKVGHLLFSPIYRCRIAHRIKDVRDSLDKVVADGNKFGLERMDVSVERREMTYSHIDALDVIGRDNEKEEIIEFLMQTCGRGEDGDKGLCVIPIVGIGGLGKTTLAKLVFNDKRMDEVFQLKMWVCVSNDFDIRRIIIKIINSTSVTTSTPILALAHQENIEHFEIEQLVSRLRHKLSGQKFLLVLDDIWNVNRSKWIELKDLIKVGAAGSKILVTTRSNSIASIMGNVPMYTLKGLSLENCLSLFVKWAFNEGEEKKYPYLLEIGKDIVKKCRGIPLAVRTLGSSLYSKYDLDKWEFVRDSEIWNLRQNKDDILPVLKLSYDQMSSYLRHCFAYFSLFPKGYLFTCDEICNLWEVFGLVRAADGSQKVENIAREYIDELHSRSFLQDFEDFGHTCVFKVHDLVHDLAVYVAKERFVVVKSCNQNVPEQAMHLSIVENDSLDHAMFSTSKSVRTILFPIQGVGVDSKTLLDSWISRYRYLRYLDLSDSSFEALPNSISKLELLRVLILFRNTKIKRLPDSICELHNLQVLSVRGCTELEALPKGLGKLINLRQLFITTKQFVLSHDEFASMKHLQTLGFHYCDNLKLLYNVAQQLTSLETLFVQSCGSLEALPLYSFPKLQTLLISNCEMLNRWLNNESLITNLSSMKHLYLGDFSSLVTLPRWILGSTNTLLSLVIKIFPDLTTLPECLTIMICLKRLHIIDCPQLSSLPSDMHRLAVLEDLTIDGCPELCRKCQPRFGEYWPMIAHVKHVFIGEPTGEEN 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01540 862 Gene3D - 422 510 IPR036388 -
Tsu06g01540 862 Gene3D - 10 124 - -
Tsu06g01540 862 PRINTS Disease resistance protein signature 191 206 - -
Tsu06g01540 862 PRINTS Disease resistance protein signature 276 290 - -
Tsu06g01540 862 PRINTS Disease resistance protein signature 373 387 - -
Tsu06g01540 862 PRINTS Disease resistance protein signature 693 709 - -
Tsu06g01540 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 435 IPR027417 -
Tsu06g01540 862 Pfam Rx N-terminal domain 12 95 IPR041118 -
Tsu06g01540 862 Gene3D - 146 329 IPR027417 -
Tsu06g01540 862 CDD RX-CC_like 11 130 IPR038005 -
Tsu06g01540 862 Gene3D Ribonuclease Inhibitor 528 844 IPR032675 -
Tsu06g01540 862 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 6 743 - -
Tsu06g01540 862 SUPERFAMILY L domain-like 499 848 - -
Tsu06g01540 862 Gene3D - 336 421 IPR042197 -
Tsu06g01540 862 PANTHER DISEASE RESISTANCE PROTEIN RP 6 743 IPR044974 GO:0006952
Tsu06g01540 862 Pfam NB-ARC domain 165 423 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01540 Tsu-Chr6 16310017 16312605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01540 192 831 WRKY Transcription Factor Family AT5G45050 22.254 9.92e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01540 - - gmx:100794422 1114.75