Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01520 ATGCAAAGAGCTATAACTCATAGTTCATACGCCCCGCCTCGTCTCTTGTTCTACGTCACAACTCCCCCAAGCACCAGCTTCTGCAGAACCATTTCGCAGGTAAATAGACATGAACCCATTAACACTAATTCTGCTTATGTTTTTGTTGGCGGTATTCCCTTTGATCTCACTGAGGGTGATTTGCTAGCTGTTTTTGCTGAATATGGCGAAGTTGTTGATGTTAATTTAGTTAGAGACAAAGGTACTGGCAAATCAAAGGGTTTTGCATTTATTGCATATGAAGATCAAAGAAGCACTAATCTTGCTGTTGATAATTTAAATGGAGCTCAGGTTTTAGGTAGAATTATTAGGGTGGATCATGTTGATAAGTATAAGAAGAaggaagaggaagatgaagagaCCGAGCGGCAGAAAAGGGAGGCCCGTGGTGTTTGTCGAGCTTTCCAAAGAGGGGAATGTACTCGTGGAGCTGGATGCAAATTTTCTCATGATGAGCAAAGAGCTGCAAATACTGGTTGGGGTGAGCATGGCAATGCAAAATGGGATAATGACAAATATGATGGTcccaagaaagaaagaagatatgacaacaaccaatcaaatcgCATTCCAGAAACTAGAGACAGAGATTCACGCTCCATAGCCCATGGCAGTGAGTTGGAATTAGACAACCAATCCAAGCGAAGTGATAGAAGAGAGGAAAAGATGTTGCGGAGGCATGATGACGATGATAAATTTGAGGGAAGAGAAAATACCAGTAGAAGAGAAACAAAGGGACCAAGAAGGCACGATGACGATGAATTTGAACATCGGTTAAGAGAAGATGGACAtaggagagaagaaaaaaaatcaaggggTGGTTACGATGGTAGGGAACCTGAATCAAGAGATAACAGAAGGGAAGACAGAAGGTCAACAAAGCGAGATGATATTGTGTTTGAGTCCAAGTCAAGAGATTCTGATGCAAGAGATGATAGAAGACCAAAGTAG 990 0.3828 MQRAITHSSYAPPRLLFYVTTPPSTSFCRTISQVNRHEPINTNSAYVFVGGIPFDLTEGDLLAVFAEYGEVVDVNLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNLNGAQVLGRIIRVDHVDKYKKKEEEDEETERQKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGEHGNAKWDNDKYDGPKKERRYDNNQSNRIPETRDRDSRSIAHGSELELDNQSKRSDRREEKMLRRHDDDDKFEGRENTSRRETKGPRRHDDDEFEHRLREDGHRREEKKSRGGYDGREPESRDNRREDRRSTKRDDIVFESKSRDSDARDDRRPK 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01520 329 Gene3D - 142 211 - -
Tsu06g01520 329 SUPERFAMILY CCCH zinc finger 142 164 IPR036855 GO:0046872
Tsu06g01520 329 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 116 IPR000504 GO:0003723
Tsu06g01520 329 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 43 310 - -
Tsu06g01520 329 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 123 IPR000504 GO:0003723
Tsu06g01520 329 MobiDBLite consensus disorder prediction 169 329 - -
Tsu06g01520 329 MobiDBLite consensus disorder prediction 178 329 - -
Tsu06g01520 329 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 43 310 - -
Tsu06g01520 329 SUPERFAMILY RNA-binding domain, RBD 37 127 IPR035979 GO:0003676
Tsu06g01520 329 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 164 IPR000571 GO:0046872
Tsu06g01520 329 Coils Coil 124 144 - -
Tsu06g01520 329 SMART c3hfinal6 141 165 IPR000571 GO:0046872
Tsu06g01520 329 Gene3D - 40 141 IPR012677 -
Tsu06g01520 329 ProSiteProfiles Zinc finger C3H1-type profile. 139 166 IPR000571 GO:0046872
Tsu06g01520 329 SMART rrm1_1 46 119 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01520 Tsu-Chr6 15958874 15963846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01520 44 118 Eukaryotic Initiation Factors Gene Family AT2G36660 30.667 1.33e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01520 K13107 - gmx:100792988 380.178