Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01498 ATGAAGTTATTTTCTAAGACAAAGGAACCCCTGGAGAAGCTTAGACAACTAATAATAGATCGTTTCAAGAGTCAAATTGGCATTGTATACTGCATGAAAACAACTGAATGCTCTGAGGTATCACAATTTTTAGAGAGTTGTAATATTAAGGCAGCAGTTTACCATGCTGGCATGCCTTACAGCCAGAGAGCTGCTGTTCAAAAGAAATGGCGTGATGGAGAGGTCCATATTGTATGTGCAACCATTGCTTCTGGCATGTGGATAGACAAGATTGATGTTCGATTTGTCATCCACAATACAATGTCAAGATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGATAATCTTCCTGCATTTTGTGTTGTTCTATACACGTTGTATGATTATTTTAGAATGCGACGACTGATGAGATATAGAAACCGAGCAGATATGGAACGCCTCAACTCGATGAAACACTACTGTGAATTAAAAGATGGATGCCGGAGAGAAACCTTACTTAAACACTTACAAGCCATATCTTTCAAATGCAAGAATGACTCTCAACCTTGTGATAAGCTGCTGCAGTTTCAAATCTGA 588 0.3861 MKLFSKTKEPLEKLRQLIIDRFKSQIGIVYCMKTTECSEVSQFLESCNIKAAVYHAGMPYSQRAAVQKKWRDGEVHIVCATIASGMWIDKIDVRFVIHNTMSRSIESYYQESGRAGRDNLPAFCVVLYTLYDYFRMRRLMRYRNRADMERLNSMKHYCELKDGCRRETLLKHLQAISFKCKNDSQPCDKLLQFQI 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01498 195 PANTHER DNA HELICASE RECQ FAMILY MEMBER 8 174 - -
Tsu06g01498 195 SMART helicmild6 38 119 IPR001650 -
Tsu06g01498 195 Gene3D - 2 191 IPR027417 -
Tsu06g01498 195 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 13 159 IPR001650 -
Tsu06g01498 195 Pfam Helicase conserved C-terminal domain 12 118 IPR001650 -
Tsu06g01498 195 PANTHER BLOOM SYNDROME PROTEIN 8 174 - -
Tsu06g01498 195 Pfam RecQ zinc-binding 132 188 IPR032284 -
Tsu06g01498 195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 186 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01498 Tsu-Chr6 15538330 15538917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01498 11 117 Eukaryotic Initiation Factors Gene Family AT5G11170 29.358 6.42e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01498 K10899 - aip:107615323 221.861