Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01497 atgaaggtcacatgcACAGAAGAATTTAGGGATTTATCTGAAATAAAGCTGGATGAGCTGGTTGGATCCCTACAAACTTATGAAATTTCTGCAAATGAATGTTCTGGAATCAAGAGCAAAAGTATagcctttgtctcaaatgcaGAAAGTGATGCTGTACAAGAAGAgacagatactgatgaaagcttatctgaagccatggcTCTTCTAGgtagacaatttaataaagtATTAAGAATGATGGATAGGCGTGGAAGACAGAATGTGgagcagaatgtgtcccccattccACTCGACATTCACAAAGACtctagttttcaaaagaaaccaaaatctGAAGAGAAAGTGAGTCAAGAGAGAGGTTTACAATGTCATGAATGCAATGGATATGGCCATATCAGATTTGAATGTCCTAACTActtaaagaaacaacaaaaaggtatgactgcaacatggtcagaggatgaagattctAATGAAGACACTTTGAATGAGACTGCTAAAcgcatcactgccttaactggaacaTGTACTTCAGACACAGAATCCAACACTGAAGATGTAACTTATGAAGAGCTAGCTGCATTATATAGAGCCTTATgtcaaagaagtgaagaggtatgtagaagtcaagaaaatcagaagaGGCTCATACTGGAACTtcaatctgaaaagaacaagcacctggcccagatttctgaactgaacAATGAGGTAACTCAACTAAACTCTACACTCGAGAAACTGAAAAAGGAAGTGTCAATGAGTAATAGTACTGTTGTTCTAGAGAAACTAATTGAATCACAGtttCTACCTTTTGGAAGAAACAAGAAGCCCCCAATGCTGAAGCAGAGGCTGCCCCATGTGCAACCCCATCCGGGAATCAGAAATAGGGAATCTGAACCATGGGTTTGTCATCATTGTGGTAGgaaaggacatataagacccTTCTGCTATAAGTTGTATGGGTATCCTAAAAAATCACTGAAGCAAAAACCTGAAGTTGAAGTGGTTGAGACCACGAAGGAGTGGAAGCCCAAGGAGAAGGATCTCTTTTCTTCCTTATCGGCGATACATGGAGATGTCAATAGAAAGATTTCCGCTGCGTTTTTCCGTTTCGCTCGATCTTCTCGAATACCGAAGAATTCTATACAGATTACGCCAACAAAACCTAGTTTCACGCCGTTAAGGTGTGATGAGAAATCACTCGAAGACTCACTTTGTCAGCGCGTCATTGTTACCCCTGATGGCAACATTACAAAACCACTAGATCCAGATTCTTTGAGCCGAGACGCCCTGGCGAAGACTGTGTACCCCagattgtttgatttcttcaaaatcaacaGTTTTGAGCAACTATTCATCAACCTAACGAATGAGAAGTTGCAACAACATTTTAATCAGCATGTATTCAAAATGGAGCAAGAAGAGTACACAAAGGAGGAAATTAATTGGAGCTATGTAGAATTCGTTGATAATCAGGATGTTCCTGATCTTATTGAGAAGAAACCTGGTGGAATTATTGCTCTTCTTGATGAAGCATGA 1545 0.3094 MKVTCTEEFRDLSEIKLDELVGSLQTYEISANECSGIKSKSIAFVSNAESDAVQEETDTDESLSEAMALLGRQFNKVLRMMDRRGRQNVEQNVSPIPLDIHKDSSFQKKPKSEEKVSQERGLQCHECNGYGHIRFECPNYLKKQQKGMTATWSEDEDSNEDTLNETAKRITALTGTCTSDTESNTEDVTYEELAALYRALCQRSEEVCRSQENQKRLILELQSEKNKHLAQISELNNEVTQLNSTLEKLKKEVSMSNSTVVLEKLIESQFLPFGRNKKPPMLKQRLPHVQPHPGIRNRESEPWVCHHCGRKGHIRPFCYKLYGYPKKSLKQKPEVEVVETTKEWKPKEKDLFSSLSAIHGDVNRKISAAFFRFARSSRIPKNSIQITPTKPSFTPLRCDEKSLEDSLCQRVIVTPDGNITKPLDPDSLSRDALAKTVYPRLFDFFKINSFEQLFINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVPDLIEKKPGGIIALLDEA 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01497 514 SMART c2hcfinal6 304 320 IPR001878 GO:0003676|GO:0008270
Tsu06g01497 514 SMART c2hcfinal6 123 139 IPR001878 GO:0003676|GO:0008270
Tsu06g01497 514 PANTHER MYOSIN 395 444 - -
Tsu06g01497 514 PANTHER MYOSIN 445 514 - -
Tsu06g01497 514 PRINTS Myosin heavy chain signature 486 514 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu06g01497 514 PRINTS Myosin heavy chain signature 433 461 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu06g01497 514 Coils Coil 218 252 - -
Tsu06g01497 514 PANTHER MYOSIN-7 395 444 - -
Tsu06g01497 514 PANTHER MYOSIN-7 445 514 - -
Tsu06g01497 514 Gene3D Myosin VI head, motor domain, U50 subdomain 348 447 - -
Tsu06g01497 514 ProSiteProfiles Myosin motor domain profile. 396 514 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu06g01497 514 SMART MYSc_2a 177 514 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu06g01497 514 Gene3D - 448 514 - -
Tsu06g01497 514 Pfam Myosin head (motor domain) 442 513 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu06g01497 514 SUPERFAMILY Retrovirus zinc finger-like domains 112 147 IPR036875 GO:0003676|GO:0008270
Tsu06g01497 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 513 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01497 Tsu-Chr6 15510497 15517940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01497 396 514 Myosins gene family AT2G31900 70.667 1.09e-58 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01497 K10357 - gmx:547854 254.603