Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01481 ATGGTGCAACTTCCGTGTGACTCTGATGGCCACTGTATGGTCTGTAAACAAAATCCTCCAAACACTGAAATTTTACCTTGTCGGACTTGCACAACTTCTTGGCACATCCCTTGTCTTCCAATCCTTCCCACCACTTTCTTAGATTGGGATTGTCCAGATTGTTGTCTACCCCAACAAAACAACCATGATCCGCCTCTCGCCGAAAACCTTATCTCTTCGATTCAAGCCATTCAATCTGATATTTCACTCACCGAGATAGAAAAGGCAATAAAGTGTCAGAAACTTGTAGGTGGATCATCTAAACCACATTCAGATGATAATAAAAGTAATGGTGTGCTTGATATCTTTGATGGAACCTTAAATTGCTCTTTCTGTATGCAATTACCAGAGAGACCTATCACgACGCCTTGTGGGCATAACTTTTGCCTTAGGTGTTTTGAGAAGTGGATTGGAAAAGGAAAACATGTGTGCGCTAAATGCAGGAGCACAATTCCATCAAAGATTGCGAGCCATCCTCGTATTAACTCACAACTAGCGATCGCAATTCGATTAGCAAAATTGGCGAGATCAGAGGGAATAAGAGAAAACATAAACACTGCAACTAAGAATGCACATTGTTTTATGCATAATGATAATCGTCCTAACACAGCATTCACTACGGAACGAGCAAAGAAAGCTGGGAAGGCAAATGCATGTTGTGGGAAAATATTTGTGACAATTCCATCTGATCATTTTGGACCAATCCTTGCAGAGAATGATCCGATAAGGAATCGTGGTGTTGTTGTGGGTGACACATGGTCGGATAGGATGGAATGTAGACAATGGGGTGCTCATTTTCCACATGTTGCAGGAATTGCTGGTCAGAGTAATCACGGCTCACAATCTGTTGCTCTTTCAGGCGGTTACATCGATGATGAGGATCATGGTGAGTGGTTCCTTTACACCGGAAGTGGTGGAAGAGACCTTAGTGGAAACAAGCGCATAAACAAACAACATTCCTTTGATCAAATATTTGATTACATGAATGAGGCGTTGAGAATTAGTTGCCTTAAAGGGTATCCTGTTCGGGTTGTTAGGTCCCACAAGGCGAAATGTTCATTTTATGCACCGGAAGTTGGAGTGCGATATGACGGTATTTATAGAATAGAGAAATGCTGGCGTAAAAATGGAATACATGGTCACAAAGTTTGTAGGTACTTGTTTGTGAGATGTGACAATGAGCCAGCCCCATGGACAAGTGATTTATATGGAGATCGCCCTCGTCCATTGCCTAAAATTAAAGAGTTGAAGAATGCATTTGATATTACTGAAAGGAAGGGTGTTCCATCATGGGACTATGATGAAAAAAATGGTTACTGGTTATGGAAGAAGCCTCCACCAAAAAGTAAGAAAATGGCAGCCATCGTAAACCCTAGTAATGGAACAATAATAAGAGATTTTAAGCCAAAGACAAAAAAAGTGTCTTTAAAACTAAAAGAGAGGATATTGAAAGAATTTGGTTGCAATATATGTGGCAAGGTGTTAGTTTTCCCTCTTACCACACCTTGTGCTCACAACTTTTGCAAAATATGCTTGGAGGATGCCTTTTCAggccaaagttatatcaagaagAGAGTTTATGAAAATGGACGCACTTTGCGATCATTGAAGAACATTATAAGATGTCCTTCGTGTTCTAATGATATTgctgattttcttcaaaatccaCAGGTTAACAGAGAAATGATGGATGTTATAGAATCACTCCAACAACAGACTGAACAAATGGATGCAAATTATGAAGAATGA 1788 0.3921 MVQLPCDSDGHCMVCKQNPPNTEILPCRTCTTSWHIPCLPILPTTFLDWDCPDCCLPQQNNHDPPLAENLISSIQAIQSDISLTEIEKAIKCQKLVGGSSKPHSDDNKSNGVLDIFDGTLNCSFCMQLPERPITTPCGHNFCLRCFEKWIGKGKHVCAKCRSTIPSKIASHPRINSQLAIAIRLAKLARSEGIRENINTATKNAHCFMHNDNRPNTAFTTERAKKAGKANACCGKIFVTIPSDHFGPILAENDPIRNRGVVVGDTWSDRMECRQWGAHFPHVAGIAGQSNHGSQSVALSGGYIDDEDHGEWFLYTGSGGRDLSGNKRINKQHSFDQIFDYMNEALRISCLKGYPVRVVRSHKAKCSFYAPEVGVRYDGIYRIEKCWRKNGIHGHKVCRYLFVRCDNEPAPWTSDLYGDRPRPLPKIKELKNAFDITERKGVPSWDYDEKNGYWLWKKPPPKSKKMAAIVNPSNGTIIRDFKPKTKKVSLKLKERILKEFGCNICGKVLVFPLTTPCAHNFCKICLEDAFSGQSYIKKRVYENGRTLRSLKNIIRCPSCSNDIADFLQNPQVNREMMDVIESLQQQTEQMDANYEE 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01481 595 Pfam RING-type zinc-finger 501 556 IPR027370 -
Tsu06g01481 595 ProSiteProfiles Zinc finger RING-type profile. 501 559 IPR001841 -
Tsu06g01481 595 SUPERFAMILY FYVE/PHD zinc finger 5 57 IPR011011 -
Tsu06g01481 595 Coils Coil 572 592 - -
Tsu06g01481 595 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 487 595 IPR013083 -
Tsu06g01481 595 Pfam SAD/SRA domain 258 406 IPR003105 -
Tsu06g01481 595 SUPERFAMILY PUA domain-like 229 423 IPR015947 -
Tsu06g01481 595 CDD RING-HC 122 160 - -
Tsu06g01481 595 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 73 IPR013083 -
Tsu06g01481 595 ProSiteProfiles YDG domain profile. 255 403 IPR003105 -
Tsu06g01481 595 ProSiteProfiles Zinc finger RING-type profile. 122 161 IPR001841 -
Tsu06g01481 595 Pfam Zinc finger, C3HC4 type (RING finger) 120 165 - -
Tsu06g01481 595 ProSitePatterns Zinc finger RING-type signature. 516 525 IPR017907 -
Tsu06g01481 595 SUPERFAMILY RING/U-box 481 534 - -
Tsu06g01481 595 SMART G9a_1 250 407 IPR003105 -
Tsu06g01481 595 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 187 IPR013083 -
Tsu06g01481 595 SMART ring_2 501 558 IPR001841 -
Tsu06g01481 595 SMART ring_2 122 160 IPR001841 -
Tsu06g01481 595 SMART ring_2 12 54 IPR001841 -
Tsu06g01481 595 SUPERFAMILY RING/U-box 114 166 - -
Tsu06g01481 595 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 592 IPR045134 -
Tsu06g01481 595 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 2 592 - -
Tsu06g01481 595 ProSitePatterns Zinc finger PHD-type signature. 12 54 IPR019786 -
Tsu06g01481 595 Gene3D - 226 419 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01481 Tsu-Chr6 15138036 15141360 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01481 2 592 C2H2 Transcription Factor Family AT5G39550 57.214 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01481 K10638 - gmx:100781044 822.772