Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu06g01477 | ATGCCTATCAAAATGCCTGATCATCCAGAGATGAATCACAATATATTGGAACAACATTCTGAGACAAAACACAATGTTCATAGTCATCAGAAGAATCACAATATATCAGAAGAATCTCACGAGACAAATCATTCTGAGACAAAACACGGCGCTCATAGTTATCCAAGTTCAGGAAACAATTCGCCAACTTATACCAAAAAGGCGAATCAAGAAGGAAAAGGTGCATTCACAAATGAATATTCATCAAGTGAAGCTACTAAAGATATGGATCAAGTTTCTAAAACAGATGAAAAATCTGCAAATAAAACTAGACCACAGAAAATTACTCCACCAAACAAAAACATGTCTGATGCTTTTACAAAACAAAGTCCAAGGACTAGGATGCCTACAAATGTTGATCCTCCAACTCCAGGAATTTCAAAGGGTATGCCTACTCATACAAAGAACAACAGTCAAAGTGGACCTGGAAGTGGAACTAGCTCGCGCAGCGACAGTTTAGAGAGCACAAGTTGTTCTTCAAACATTAGGCCACATACTGGTGGTGATGTAAGGTGGGATGCAATTAACATGGCTTTGAAAAATGGTCCTCTTAATCTTAGCCATTTTCGACTTCTTAAGCGTATCGGTTATGGAGACATTGGAAGTGTGTATCTTGTTGAACTTAAAGGAACTGATGCTCATTTTGCTATGAAAGTAATGGACAAGGCTGCTCTTATAAGTAGAAACAAGCTTCTTAGATCACAAACTGAAAGGGAGATTCTTGGTCTTCTTGATCATCCATTTTTGCCTACTTTGTATTCTTACTTTGAAACTGATAAGTTTTACTGTCTGGTTATGGAGTACTGTAGTGGCGGTGATCTTCATTCGCTTCGACAGAAACAACCAAATAAGTGTTTTACTGAAGAAGCTGCAAGGTTCTATGCATCAGAGGTTTTGTTAGCTCTTGAGTACCTACACATGCTTGGCATTGTATACAGAGATTTAAAGCCAGAAAATCTTTTAGTTAGAGATGAAGCAAGCGGCAGCAGCAGTGATTATGGAAGTATATTGAATGATGACCAAGCAGCTGCTCAGCCATCAACAGGCTTCTTCCCTCGGATTTTACCTTCAAAAAAGAATCGGAAGGCAAAATCAGACTTCGGCCTATTGGTTAACGGAAACCGCCTTCCAGAACTAATGGCAGAACCAACCAATGTGAGATCAATGTCTTTTGTAGGCACACATGAATATCTTGCACCTGAAATAATCAAAGGAGAAGGACATGGTAGTGCAGTAGATTGGTGGACTTTCGGAATCTTCTTGTATGAATTGTTACACGGTGCAACGCCTTTTAAAGGCGCAGGATACAAAGCAACACTTTTCAATGTTGTTGGACAGCCATTAAGGTTTCCAGATAGTCCACAAATTAGTCCTGTGGCTAAAGATCTTATTAGAGGATTGTTGGTGAAGGAACCTCAGAAGAGAATTGCATACAAAAGAGGAGCAACAGAAATAAAACAGCATCCATTTTTCGAAGGAGTGAATTGGGCTCTAGTTAGAAGTGCAACACCACCACATATACCAGATATGATAGACTTTTCAAAGTATGCTAAAAAAGAAACAGCACCAGCACCAGCACCAGCACCAGCACCAGTTGATAAGAAGATGCCAGAAATTGCTAgtgataaaaaatgcaaaaattcaACTGATAATTCTTATGTAGATTTTGAGTATTTTTAG | 1719 | 0.3857 | MPIKMPDHPEMNHNILEQHSETKHNVHSHQKNHNISEESHETNHSETKHGAHSYPSSGNNSPTYTKKANQEGKGAFTNEYSSSEATKDMDQVSKTDEKSANKTRPQKITPPNKNMSDAFTKQSPRTRMPTNVDPPTPGISKGMPTHTKNNSQSGPGSGTSSRSDSLESTSCSSNIRPHTGGDVRWDAINMALKNGPLNLSHFRLLKRIGYGDIGSVYLVELKGTDAHFAMKVMDKAALISRNKLLRSQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEYCSGGDLHSLRQKQPNKCFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEASGSSSDYGSILNDDQAAAQPSTGFFPRILPSKKNRKAKSDFGLLVNGNRLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGATPFKGAGYKATLFNVVGQPLRFPDSPQISPVAKDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGVNWALVRSATPPHIPDMIDFSKYAKKETAPAPAPAPAPVDKKMPEIASDKKCKNSTDNSYVDFEYF | 572 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu06g01477 | 572 | PANTHER | FLIPPASE KINASE 1-RELATED | 347 | 572 | - | - | |
| Tsu06g01477 | 572 | Gene3D | Transferase(Phosphotransferase) domain 1 | 379 | 522 | - | - | |
| Tsu06g01477 | 572 | Gene3D | Transferase(Phosphotransferase) domain 1 | 286 | 349 | - | - | |
| Tsu06g01477 | 572 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 323 | 335 | IPR008271 | GO:0004672|GO:0006468 | |
| Tsu06g01477 | 572 | Pfam | Protein kinase domain | 203 | 504 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Tsu06g01477 | 572 | MobiDBLite | consensus disorder prediction | 49 | 88 | - | - | |
| Tsu06g01477 | 572 | MobiDBLite | consensus disorder prediction | 1 | 178 | - | - | |
| Tsu06g01477 | 572 | PANTHER | FLIPPASE KINASE 1-RELATED | 47 | 346 | - | - | |
| Tsu06g01477 | 572 | MobiDBLite | consensus disorder prediction | 534 | 560 | - | - | |
| Tsu06g01477 | 572 | Gene3D | Phosphorylase Kinase; domain 1 | 200 | 285 | - | - | |
| Tsu06g01477 | 572 | PANTHER | SERINE/THREONINE-PROTEIN KINASE AGC1-5 | 47 | 346 | - | - | |
| Tsu06g01477 | 572 | MobiDBLite | consensus disorder prediction | 10 | 48 | - | - | |
| Tsu06g01477 | 572 | CDD | STKc_phototropin_like | 200 | 525 | - | - | |
| Tsu06g01477 | 572 | MobiDBLite | consensus disorder prediction | 89 | 103 | - | - | |
| Tsu06g01477 | 572 | MobiDBLite | consensus disorder prediction | 142 | 177 | - | - | |
| Tsu06g01477 | 572 | SUPERFAMILY | Protein kinase-like (PK-like) | 191 | 525 | IPR011009 | - | |
| Tsu06g01477 | 572 | SMART | serkin_6 | 202 | 504 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Tsu06g01477 | 572 | MobiDBLite | consensus disorder prediction | 104 | 129 | - | - | |
| Tsu06g01477 | 572 | ProSiteProfiles | Protein kinase domain profile. | 202 | 504 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Tsu06g01477 | 572 | PANTHER | SERINE/THREONINE-PROTEIN KINASE AGC1-5 | 347 | 572 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu06g01477 | Tsu-Chr6 | 15068956 | 15071495 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu06g01477 | 166 | 572 | AGC Kinase Gene Family | AT1G79250 | 66.079 | 0.0 | 581 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | AGC_RSK-2 | Tsu06g01477 | Pkinase | 4.1e-56 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu06g01477 | - | - | ahf:112703041 | 687.182 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu06g01477 | 06 | 15068956 | 15071495 | Tsu06g01477 | 06 | 15068956 | 15071495 | ECH |