Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01472 ATGGCCAATTCTGAGTGGTCTCAAATTTTGTTCATAAACATCATAATATTGGCAACCCTTTTCCTATGTAACATCAATTTTGCATTTGCAACAGACCCATTTGTCCGACAAAGGCAAGACAAGATTGATGAGCCACTCCCAGGCCAAAACTTCAACATCAGCTTCGAACACTATTCTGGGTATATAACTGTCAACGAGGATGTTGGTAGGACATTGTTTTATTGGTTCATTGAAGCAGATCATATAGACCCTTCTTCAAAACCACTTCTTTTATGGCTTAATGGTGGACCTGGTTGTTCATCTATTGCTTATGGTGAAGCTGAAGAAATTGGTCCTTTTCATATTAATTCAGATGGAACACTTTATCTTAATCCTTATTCTTGGAATCAAGtTGCCAACATTCTATATATTGACTCTCCTGTTGGAGTTGGATTTTCATATTCAAAGAATTCATCTGACATTCGCAACAATGGTGATAAGAGGACAGCTGAGGACAATCTCATATTTCTACTGAAGTGGTTTGAGCGTTTTCCCCAGTATAAAGAAACCGACTTTTTCATCATTGGTGAAAGCTATGCAGGACATTATGTTCCCCAACTTAGCCAAGTTATTGTCAAGCACAACTCAGCTACAAAACAAGATTCTATAAATCTGAAAGGTTACATGGTAGGAAATGCTCTAACAGATGATTTCAATGATCAATTGGGGATTTTCCAGTTTATGTGGTCAAGTGGTATGATTTCGGATCAAACATTCAAACTCTTGAACCTGCTATGCGATTTTGAGTCAGTCGAACACCCATCAGAGTCATGCGACAAAATGTGGGACATTGCCTATAATGAACTCGGTAATATAGATCCATACAGTATCTTTACTCCTCCTTGCCATGGCAGTGCTAATCAGCGCGTTAAAAGACCGCATAGTCTTGGAAGACTGAGAAGTGTGTATGATCCTTGCACAGAGAAACACAGCACTATATACTTCAATCGACCAGAGGTCCAGAGGATTCTACATGTTGATCCTGATCATAAGCCTGCTAAATGGGAGACCTGCAATATGGACGTAAATAGAAACTGGAAGGATTCACCTATAACAGTACTCGATATATATCGTGAACTTATTCCTACTGGGCTGCGAATATGGATTTTCAGTGGTAATACAGATGCTGTAATCCCAGTAACATCTACTCGCTACACCATAGCCGCTCTAAAGCTTCCAACTGTGAGCCCCTGGCGTGCATGGTATGATGACGGAGAGGTAGGAGGTTGGACTCAAGAATACGATGGACTCACGTTTGTAAACGTAAGGGGTGCAGGGCATGAAGTTCCTCTGCATAGACCAAAACTTGCTCTAACACTGTTCAAAGCCTTCTTAGCAGGAACCTCCATGCCAACTCTTGAACCACTCTCACTCACCGCCGCCTATTGA 1428 0.4104 MANSEWSQILFINIIILATLFLCNINFAFATDPFVRQRQDKIDEPLPGQNFNISFEHYSGYITVNEDVGRTLFYWFIEADHIDPSSKPLLLWLNGGPGCSSIAYGEAEEIGPFHINSDGTLYLNPYSWNQVANILYIDSPVGVGFSYSKNSSDIRNNGDKRTAEDNLIFLLKWFERFPQYKETDFFIIGESYAGHYVPQLSQVIVKHNSATKQDSINLKGYMVGNALTDDFNDQLGIFQFMWSSGMISDQTFKLLNLLCDFESVEHPSESCDKMWDIAYNELGNIDPYSIFTPPCHGSANQRVKRPHSLGRLRSVYDPCTEKHSTIYFNRPEVQRILHVDPDHKPAKWETCNMDVNRNWKDSPITVLDIYRELIPTGLRIWIFSGNTDAVIPVTSTRYTIAALKLPTVSPWRAWYDDGEVGGWTQEYDGLTFVNVRGAGHEVPLHRPKLALTLFKAFLAGTSMPTLEPLSLTAAY 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01472 475 SUPERFAMILY alpha/beta-Hydrolases 45 463 IPR029058 -
Tsu06g01472 475 Pfam Serine carboxypeptidase 47 459 IPR001563 GO:0004185|GO:0006508
Tsu06g01472 475 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 29 15 467 - -
Tsu06g01472 475 Gene3D - 319 356 - -
Tsu06g01472 475 Gene3D - 366 460 - -
Tsu06g01472 475 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 15 467 IPR001563 GO:0004185|GO:0006508
Tsu06g01472 475 Gene3D alpha/beta hydrolase 37 297 IPR029058 -
Tsu06g01472 475 ProSitePatterns Serine carboxypeptidases, serine active site. 187 194 IPR018202 GO:0004185
Tsu06g01472 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 147 IPR001563 GO:0004185|GO:0006508
Tsu06g01472 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185|GO:0006508
Tsu06g01472 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 173 198 IPR001563 GO:0004185|GO:0006508
Tsu06g01472 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 136 IPR001563 GO:0004185|GO:0006508
Tsu06g01472 475 ProSitePatterns Serine carboxypeptidases, histidine active site. 430 447 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01472 Tsu-Chr6 15014258 15021740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01472 346 463 Calmodulin-binding Proteins AT2G22960 25.210 9.06e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01472 K16297 - gmx:100805227 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01472 06 15014258 15021740 Tsu06g01472 06 15014258 15021740 ECH