Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01471 ATGGGCATCAAAGATCTTCTCAGATTCATGAAACCTTATGTTGAACCCATTCACATCAAGAACTACGCTGGCAAACGTGTGGGTATTGATGCATATTCATGGCTTCATAAAGGGGcttattcATGTAGTATGGAGCTTTGTCTTGATTCTGATAGTGAAAAGAAATTGCGGTATATTGAATACTTTATGCATAGAGTGAACTTGCTTCGGTACTATAAAGTAACACCTGTTGTTGTTTTTGATGGTGGCAATGTTCCTTGCAAAGCAGCAACTGAGAAAGAGAGGAAtaaaaaaaGACATGCGTATCGTGAGTTGGCGATGAATAAGCTCAAAGAAGGGAATGTTAATGCTGCTTCTGAGCTCTTTCAGAGAGCAGTGAATATTACTCCTGTTATGGCACATAAACTAATTCAGACTTTGAAATCAGAGAACATTGAGTTTGTTGTAGCTCCATATGAAGCAGATGCTCAGCTAGCATACTTGTCCCACCTTGAAACTGAAAAGGGCGGAATTGCAGCAGTGATCACAGAAGATAGTGATCTGATAGCATATGGTTGTCCAGCTGTTATCTTTAAGATGGACCGTGAGGGGAATGGCGAAAGAATAGAGTTAGAGAAAGTTTTTTCTGCTGTATCTTGTAAACCTTCATTTCGGAATTTCGATATGAAACTTTTCACTGGTATGTGTGTTTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGCATTGGTGTTGCTCGAGCTCATGCCCTTGTTTCGAAGTATCGGAATATCGATCGTATCTTATCTGTTCTTAAGTTTGAGAAAGGCGATCAAATGCTAGAAGATTACGCCAAATCCTTCAATGATGCACTTGCGGTCTTTCAGCATGCTCGAATATATGATATCAATACCAAAGAACTCAAGCACATGAAGCCTCTTCCGGAAAATTTTCTCGAGTCACTTAACGAAAACCTTGATTTTTTGGGACCAGAAATTCCCTCAACTATAGTCAAATCAATAGCTGAAGGAAACTTGAATCCATCAACTAAGGAAGCCTTCGATGAGTCTGAATGTTCTAGACATCCTTTACACCCTATTGATCCTAAATCCATTGGTCAACTCAGGAAAAGTGAAGTTCCAGCACCATTTAAACgggaaaattgtttttcagTATTTGGCTCACAGAACTTCAACGAAAATTATACAGGCAAGTCATATAAATTGGAGATGCATTGCGTTATTACAACGCTATCAGATAAAGATAAGTATTCAAACGAAACATTGGCACTTCAGAAACTAATCATGCCATTGAAAACaaatgaaacaataaaaaaaactattacatgtgataaaaaaaatttgaaggtTCCTAACAACAACCCTTTTAGGATAAGAAAACAGGAGGAGGAATTAAATTTCTTtcagaaagatgaaacagtTGAAGAAATTTCTATTGTAAGCAGTGTTGAAGAAATGTCTATTGATCTTGATGATTACATGTCACCAAATAACATCCAAGAAAAAGGGTCTAACAATATGTCAAGGAAAAGGAAATTTGAGAATGTTTGCTTGGATAAAGTAGAAGCTAGTGATGAACAAGTTTCAGGAGTGACTGAAGTGGAAAATTGTGATGCTTTATGCTTGAATATAGAGTCACAAGAAAGTGTAAAGTCTAAGATTAGGAATAATGATTTGAAAGGAAGAAGTGGTGGAAGTGAAAAGAAATCCAAGATAAGTAACTCCAAGAAAAAGGGGAGTAATATTAGAactattttgaatttcttttcaAAAGTGTAA 1779 0.3508 MGIKDLLRFMKPYVEPIHIKNYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSEKKLRYIEYFMHRVNLLRYYKVTPVVVFDGGNVPCKAATEKERNKKRHAYRELAMNKLKEGNVNAASELFQRAVNITPVMAHKLIQTLKSENIEFVVAPYEADAQLAYLSHLETEKGGIAAVITEDSDLIAYGCPAVIFKMDREGNGERIELEKVFSAVSCKPSFRNFDMKLFTGMCVLAGCDFLPSVPGIGVARAHALVSKYRNIDRILSVLKFEKGDQMLEDYAKSFNDALAVFQHARIYDINTKELKHMKPLPENFLESLNENLDFLGPEIPSTIVKSIAEGNLNPSTKEAFDESECSRHPLHPIDPKSIGQLRKSEVPAPFKRENCFSVFGSQNFNENYTGKSYKLEMHCVITTLSDKDKYSNETLALQKLIMPLKTNETIKKTITCDKKNLKVPNNNPFRIRKQEEELNFFQKDETVEEISIVSSVEEMSIDLDDYMSPNNIQEKGSNNMSRKRKFENVCLDKVEASDEQVSGVTEVENCDALCLNIESQESVKSKIRNNDLKGRSGGSEKKSKISNSKKKGSNIRTILNFFSKV 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01471 592 ProSiteProfiles TPR repeat profile. 99 132 IPR019734 GO:0005515
Tsu06g01471 592 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Tsu06g01471 592 SMART xpgineu 141 213 IPR006086 GO:0004518
Tsu06g01471 592 Gene3D - 218 291 - -
Tsu06g01471 592 CDD H3TH_FEN1-like 225 295 - -
Tsu06g01471 592 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Tsu06g01471 592 MobiDBLite consensus disorder prediction 553 574 - -
Tsu06g01471 592 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Tsu06g01471 592 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Tsu06g01471 592 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 587 - -
Tsu06g01471 592 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 349 IPR036279 -
Tsu06g01471 592 SMART xpgn3 1 102 IPR006085 GO:0004518
Tsu06g01471 592 Gene3D - 1 212 - -
Tsu06g01471 592 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Tsu06g01471 592 MobiDBLite consensus disorder prediction 553 578 - -
Tsu06g01471 592 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 587 IPR006084 -
Tsu06g01471 592 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Tsu06g01471 592 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Tsu06g01471 592 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Tsu06g01471 592 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Tsu06g01471 592 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01471 Tsu-Chr6 15008760 15013247 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01471 1 318 Core DNA Replication Machinery Family AT5G26680 24.024 3.21e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01471 K10746 - gmx:100817932 790.03