Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01465 ATGGCCAATTCTGAGTGGTCTCAATTTTTGTTCATAAACATCATAATATTGGCAACCCTTTTCCTATGCAACATCAATTTTGCATTTGCAACAGACCCATTTGTCCAACAAAGGCAAGACAAGATTGATGAGCCACTCCCGGGCCAAAACTTCAACATCAGCTTTGAACACTATTCTGGGTATATAACAGTGAACGAGGATGTTGGTAGGACATTATTTTACTGGTTCATTGAAGCAGATCATGTAGATCCTACTTCAAAGCCTCTTGTTTTATGGCTTAATGGTGGTCCTGGTTGTTCATCTATTGCTTCTGGTGAAGCTGAGGAAATTGGTCCTTTTCATATTAATTCAGATGGCAAAACCCTTTATCTCAATCCTTATTCTTGGAATAAAGTTGCCAACATTCTTTTTATTGAGTCTCCTACTGGAGTTGGATTTTCATATTCAAAGAATTCATCTGACATTCTCAACAATGGTGATAAGAGGACAGCTGAGGACAATCTCATATTTCTACTGAAGTGGTTTGAGCGTTTTCCCCAGTACAAAAAAATAGACTTTTTCATCAGTGGTGAGAGCTATGCAGgACATTATGTTCCCCAACTTAGCCAAGTTATTGTCAAGCACAACTTAGCTACAAAACATAATTCTATAAATCTGAAAGGTTACTTGGTAGGAAATGCTCTAACAGATGATTTCAATGATCAATTGGGGATTTTCCAGTTTATGTGGTCAAGTGGTCTGATTTCGGATCAAACATTCAAGCTCTTGAACCAACTATGTGATTTTCAGTCAGTCATACACCCGTCAAAATCATGCGAAAATATCTTGGAAATTGCTAATAATGAAATGGGTAATATAGATCCATACAGTATCTTTACCCCTCCTTGCCATGGCAGTGCTAATCAGCGGGTTAAAAGACCGCATAGTCTTGGAAGACTGAGAAGTGTGTATGATCCTTGCACAAAGAAGCACAGCACTGTATACTTCAACCTGCCTGAGGTCCAAAGGATTCTACATGTTGATCCAGATCATAAGCCTGCTAAATGGGAGACCTGCAATATGGACGTAAATACAAACTGGAAGGATTCACCTAGAACAGTTCTCAATATATATCGTCAACTTATTCCTACCGGGCTGCGAATATGGATTTTCAGTGGCAATACAGATGCCGTAATCCCGGTAACATCTACTCGCTATACCATAGCTGCTCTCAAGCTCCCAACTGTGAGCCCTTGGCGTGCATGGTATGATGACGGAGAGGTTGGTGGTTGGACTCAAGAATACGCGGGGCTCACGTTTGTAAACGTAAATGGCGCAGGGCATAAAGTTCCTCTGCATAGACCAAAACTTGCTCTAACACTGTTCAAAGCTTTCTTAGCAGGAACCTCCATGCCAACTCTTGAGCCACCCTCACTCACGGCTGCCTATTGA 1431 0.4095 MANSEWSQFLFINIIILATLFLCNINFAFATDPFVQQRQDKIDEPLPGQNFNISFEHYSGYITVNEDVGRTLFYWFIEADHVDPTSKPLVLWLNGGPGCSSIASGEAEEIGPFHINSDGKTLYLNPYSWNKVANILFIESPTGVGFSYSKNSSDILNNGDKRTAEDNLIFLLKWFERFPQYKKIDFFISGESYAGHYVPQLSQVIVKHNLATKHNSINLKGYLVGNALTDDFNDQLGIFQFMWSSGLISDQTFKLLNQLCDFQSVIHPSKSCENILEIANNEMGNIDPYSIFTPPCHGSANQRVKRPHSLGRLRSVYDPCTKKHSTVYFNLPEVQRILHVDPDHKPAKWETCNMDVNTNWKDSPRTVLNIYRQLIPTGLRIWIFSGNTDAVIPVTSTRYTIAALKLPTVSPWRAWYDDGEVGGWTQEYAGLTFVNVNGAGHKVPLHRPKLALTLFKAFLAGTSMPTLEPPSLTAAY 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01465 476 Gene3D - 367 461 - -
Tsu06g01465 476 Pfam Serine carboxypeptidase 47 460 IPR001563 GO:0004185|GO:0006508
Tsu06g01465 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 137 IPR001563 GO:0004185|GO:0006508
Tsu06g01465 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 199 IPR001563 GO:0004185|GO:0006508
Tsu06g01465 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 431 444 IPR001563 GO:0004185|GO:0006508
Tsu06g01465 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 138 148 IPR001563 GO:0004185|GO:0006508
Tsu06g01465 476 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 29 15 468 - -
Tsu06g01465 476 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 15 468 IPR001563 GO:0004185|GO:0006508
Tsu06g01465 476 ProSitePatterns Serine carboxypeptidases, serine active site. 188 195 IPR018202 GO:0004185
Tsu06g01465 476 ProSitePatterns Serine carboxypeptidases, histidine active site. 431 448 IPR033124 GO:0004185
Tsu06g01465 476 Gene3D alpha/beta hydrolase 37 298 IPR029058 -
Tsu06g01465 476 SUPERFAMILY alpha/beta-Hydrolases 45 464 IPR029058 -
Tsu06g01465 476 Gene3D - 320 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01465 Tsu-Chr6 14904431 14909605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01465 347 464 Calmodulin-binding Proteins AT2G22960 26.050 4.32e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01465 K16297 - gmx:100805227 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01465 06 14904431 14909605 Tsu06g01465 06 14904431 14909605 ECH