Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01459 ATGCAATCTTTGGTTTCTGCAAAGTTTCTTTTGCTTGTTGGAGAATCATTCCCTGTGAGAAGGGCTTTGTTGAATTCTAGGTTTGCTTGGTTTCATAGTAGTGTTCAATGTATGAGCCAGATTAATCGTGAATCTCTAACCCTTTCAAGCATTGGTGTTAAAAGTgaacaaattgaaattgaacCCAAGATTATAAGTAAATCAAATAAGGTTAAGCCATTAGGTTTAGCTTCTTCTGAGGTTTTGAATAGTAAAAGAAAACCCTTTGGAATTGGTGAGAAGAAAATTGTTCGGGCTAAAGAGAAACAGAAAATAGATAATGCACCATTTGCTGCTAAGTCGTTTTCGGAACTTGGTATTCCGGAAGTGTTGATTGAGCGGCTAGGAAAAGAGGGTTTCAATGTTCCAACTGATGTTCAGTCTGCTGCTGTTCCTACTATTTTGAAGAACCATGATGTTATAATTCAGTCGTATACGGGTTCAGGGAAAACATTGGCTTATCTCCTTCCTATATTGTCTGTTATTGGGCCGTTGAGAGGTGAAATTCGTGAATGTGATGTTGATGGTGGTGAGGCTGGGAAGAAATTAGGAGTTGAAGCAGTGATTGTTGCTCCTTCTAGAGAGCTTGGAATGCAGATAGTGAGAGAGTTTGAGAGGATATTGGGAGTGGATAACAAGAAAGTGGTTCAGCAGCTTGTGGGAGGTGCGAACCGAACTCGGCAGGAAGAAGCTCTCAAGAAAAACAAACCTGCCATTGTTGTTGGTACACCTGGTAGGATTGCTGAACTCAGTGCAAGTGGGAAGCTTCGCACACACGGCTGCCAATATTTGGTATTAGATGAAGTAGATGAGCTGCTGTCATTCAATTTTCGTGAAGACATGCACAGGTTATTGGAGCATGTTGGGAGGAGATCGGGTGGAGACCTAAAATCAAATGCTAAAAAGGCCGAGCGTCAGTTAATTATGGTTTCTGCAACTGTGCCGTTTTCGGTTGTTAGGGCAGCTAAAAGCTGGGGTAGTGATCCGCTTCTTGTTCAAGCTAAGAAAATTGTACCGCTTGAAACTTTGTCTCCTGAACCGGTCAATTTGTCACCGAACTCAAGTTCTAACTCCACTAAGCCATCTAAGGCTGTGGTAGAGAGTCTACCTCCAGCGTTGAAACATTATTACTGTGTTGTGAGGTTGCAGCACAAAGTTGATACATTGAGAAGATGTATTCATGCATTGGATGCAAAATTTGTTATAGTTTTCATGAATCATACTAAGCAGCTAAAGGATGTTGTCTTCAAGCTTGAGGCCCGTGGCGTAAAAGCCGCAGAGTTACATGGTGATCTTGGGAAGCTTGGTAGGTCAACAACTCTGAAGAAGTTTAAGAACGGTGAGGTTAGAGTTCTTGTGACAAATGAATTATCAGCAAGAGGTTTAGATGTGGCAGAATGTGATCTTGTGGTTAATCTGGACTTACCGACAGATTCAATTCACTATGCACACCGAGCTGGTCGAACTGGTCGGCTTGGTAGAAAAGGCACAGTGCTTACTATATGTGAAGAGTCAGAGGTCTTTGTTGTGAGAAAATTGCAGAAGCAACTTGAAATACCGATAACATGCTGTGATTTTGTCGAGGGAAAGCTTCTTGTCACTGAAGAAGAGACTACTCTAAGCAGTGCTTCTTGA 1674 0.4152 MQSLVSAKFLLLVGESFPVRRALLNSRFAWFHSSVQCMSQINRESLTLSSIGVKSEQIEIEPKIISKSNKVKPLGLASSEVLNSKRKPFGIGEKKIVRAKEKQKIDNAPFAAKSFSELGIPEVLIERLGKEGFNVPTDVQSAAVPTILKNHDVIIQSYTGSGKTLAYLLPILSVIGPLRGEIRECDVDGGEAGKKLGVEAVIVAPSRELGMQIVREFERILGVDNKKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLRTHGCQYLVLDEVDELLSFNFREDMHRLLEHVGRRSGGDLKSNAKKAERQLIMVSATVPFSVVRAAKSWGSDPLLVQAKKIVPLETLSPEPVNLSPNSSSNSTKPSKAVVESLPPALKHYYCVVRLQHKVDTLRRCIHALDAKFVIVFMNHTKQLKDVVFKLEARGVKAAELHGDLGKLGRSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRKGTVLTICEESEVFVVRKLQKQLEIPITCCDFVEGKLLVTEEETTLSSAS 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01459 557 Pfam DEAD/DEAH box helicase 137 331 IPR011545 GO:0003676|GO:0005524
Tsu06g01459 557 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 545 IPR001650 -
Tsu06g01459 557 SMART ultradead3 132 364 IPR014001 -
Tsu06g01459 557 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 25 534 - -
Tsu06g01459 557 CDD DEADc 124 346 - -
Tsu06g01459 557 Gene3D - 86 347 IPR027417 -
Tsu06g01459 557 Gene3D - 383 539 IPR027417 -
Tsu06g01459 557 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 25 534 - -
Tsu06g01459 557 SMART helicmild6 425 506 IPR001650 -
Tsu06g01459 557 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 113 141 IPR014014 GO:0003724
Tsu06g01459 557 Pfam Helicase conserved C-terminal domain 401 506 IPR001650 -
Tsu06g01459 557 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 345 IPR014001 -
Tsu06g01459 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 526 IPR027417 -
Tsu06g01459 557 CDD SF2_C_DEAD 386 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01459 Tsu-Chr6 14761896 14766153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01459 114 540 Eukaryotic Initiation Factors Gene Family AT3G19760 25.635 1.62e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01459 - - gmx:100812968 828.55