Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01436 ATGCAAACTACCACACCGGTTGCCTCTGTTTCTCATAATGGTAATCCTATTGCCTTTGTTTCGCAATCTTCTTCACTTGGACCATGGATTCTCGACTCAGGCGCCTCTGATCATATGTCCGGTAACAAATTGCTTTTCTCACATCTGACTTATATAGACACACTCCCTAATATTACTTTGGCTAATGGATCACAAACCAAATGTCAAGGCATTGGCCAAACTAGTCCCATACCCACACTTTCTTTGGACTCCGTGCTCTATGTTCCTGGATGTCCATTTAACTTAATATCCATCAGTAAACTCACTCGTACCCTACCTTACTCTGTCACTTCAGCCATTGAGTCTTCACATATTATTCACCAGCGTTTGGGCCATCCTAGCCTTCAGAAATTGCATCTTATGGTTCCAAGTCTATCCAAAGTATCTACCTTAGAGTGTGAGTCGTGTCAATTTGGGAAACATACTAGGAGTTCCTTTCCCGGTAGAGTCAATAAAAGAGCTACGTCTCCTTTTGCTTTAGTTCATTCTGATATTTGGGGTCCTAGTCGTGTTGTTTCATGTTTAGTTGCAAGGTCGAGTGCAGAAGCAGAATATCGTGCTATGGCAGCAACAGCTTGTGAACTTACATGGCTAAGGCAATTactcaaacaattaaaattaggaGACGTCAAGGCAATGAAATTAATTTGTGACAACCAAGCTGCATTACATATTGCTTCCAACCCGGTTTTTCATGAAAGAACTAAGCAAATAGAGATCGACTGTCACTTCGTACGAGATAAAGTTCTTTCAGGAGAAATCGATCGACTACCTAAAGCTCGTGTTGTTTATTGCTCAGCTACTGGTGCATCTGAACCTCGTAATATGGCTTATATGGTTCGACTTGGCCTTTGGGGAGATGGAAGtgattttcatgatttttatgattttctagATGCTATGGAAAAAGGGGGTGTTGGAGCTCTAGAGCTAGTTGCAATGGACTTGAAAGCAAGGGGAATGTATTTATGTCGTACCCTTAGCTACAAGGGTGCTGAGTTTGATATTATAGAAGCAAGATTAGACGATAAAATGACGGACGTGTATAAAAAGGCTACAGAAGTTTGGGTGGAATTGCGTGAGAGATTGATCTTTGCCATTGAACACCTACCTGGGAAACCTAATACTAGACAACTATGGCTATTATACTGGGCAACCCACCAGCGCTTCTTTAAACACTTGTGTATGTCTGCTAAAGTCCCTACTGTAGTGAGACTGGCGAAACAGGCATTAATGGAAGACAAGTGTGTAGTCATAGGTCTGCAGAGTACCGGGGAAGCAAGGACAGAGGATGCTGTTTTAAAATACGGCTCTGAACTCGATGACTTTATTTCTGGACCTCGTGAGTTAATGCTAAAATTTGTTCAAGATCATTGTGTTCAATATGATTACGCAATGCCGACAAAGCCTGAAGTTCCCCCAGATGATGGTCCCCGAAGAAAGAGGAGCTTTGCAGGTCCTGACGTTTCAGAAAAATCTAGAGTCAGTAAAGTAGCTAAATCGGAACCTCCTAGTGATGCTGAAAGTGACGAAGAATGTGGAACTGTCTCTGATTCTGATTACGGACCAGAAGAGGATGAAAGTGCTGCCGACTCTGATTATGATGAGTTTCAGAAATGTGAAATTAAAAGTGATGAAGAGGAAAGGGAAAACTTGTTGCAGTGTTCCCGCTGTGGAAAATATGCTCATCAATCATGCTTGGTGCCCCCAATTCGCAGTTTTATTCTTGAGCAATGGACATGTGATTCTTGCAAGGATAAAACTGTCAATTATCCCCCTCCTGGAATAAACATAAATGAACAGCAGAAAAGTTTTGACACACCCATCGAGCGCAAGAAAACAATTTTAGAGATGATTCATGCTTTGGATCTACCAAACAATCCCTTGGATGATATTATTGATCAGTTAGGAGGCCAGGACATAGTTGCAGAAATTACAGGAAGGAAGGGAAGACTTGTGAGAGACCCTAGTGGAATGGGTGTGGTTTATGAGCCTCGAAATACAAAAGACGTCACTGCCGAAATGGTCAACATGCATGAAAAAATGCTCTTCATGGACGGTAAGAAGTTAGTGGCTATCATCTCTGAAGCTGGATCAGCTGGCGTTTCGTTGCAGGCAGACAGAAGAGTGAGAAATCAGAAAAGAAGGGTTCATATAACAGTAGAACTTCCATGGAGTGCCGACCGAGCAGTTCAGCAGTTTGGAAGAACTCATAGATCAAATCAAGTCTCAGCACCACAATACAGATTACTATTCTCAAACTTTGGTGGAGAACGCCGATTTGCATCAACTGTTGCTATGAGATTAGAATCCCTCGGGGCTTTGACTCAGGGGGATCGCAGGGCTGGACCTTCATTAAGTGCATATAATTATGAGAATGATTATGGGAAGAGGGCTCTGGAGAATTTGTACAAAGGATTAAAGGAGCCgGATCTTCTTGCTGCTGTATTTCTAGGAGGCTTATCTGACATACCAGATACAATTAAAGATTTTAATACGCGGGCAACAGCTGCTCTTGATTCTGTTGGAATTTTTGTGGACGGCAGTCATGGAAACTCTaaaaaaagcaaagaaaataaacaagctATTAGACGATTCCTCAACCGGATTTTGGGCATAGCTCCTGAGATTCAGAATAGGCTATTTAAGTCATTTGTGAATAACTTGGatcttcttgttcaaaaagCTCGCATTGAAGGTAGCTTTGACCGAGGCATTGTTCACTTGAAAGCTAATTTCATTGAACTGCAAGGGACTCCAAAGACCGTCTATGTTGATCAAATGATGGGGGCTTCAACTGTTTTGTTCACATTCATCTTTGATCGTGGAGTTTCATGGGAGTCGGCGAACACCATGCTAAAAGGGAAGCCAAAAGCTGAATTTGGTTCATCTGATGATGGCTTCTACATGTCCAAGAGTGAGTTTAGGGGCAAACGTCATGTTATTTTAGCATTTGAAAGTTCTGTTTCAGCTATGTATAAGATAGTCCGTCCTACTACCGGAGAATCACCTCGGGATATGCATCGGGCAGAATTAACTGGAAAATATTCAAAAGTTTCATCTTTAGAGGCAGCCAAAATTCGTTGGGAACACGATTATGAAGAATCATCTAAACAGTGCATGCATGGTCCCAATTGTAAGAATGGTAAATCATGTTCAGTTGGCTCAAGACTACAGGAAGTAAATGTCTTATGTGGTGTCATTATTCCTATTTGGGGAAAAATACAAACGGCTCTTTCTAAGCAGGTCAAACAAATTCATAGGAGGTTACGCATCGTTTGCGTTGAAACTACATCAGATAACAGTCGTATAGTTGGGCTTCTTGTACCTAATGCAGCAGTTACACCTGTGCTTgaagGTTTAAGTACATCTTCTGTAGGTTTAACACAGTATACCATCGttattgttgctcagatcttatTTCCGGTGGCTCTTGGTTGTGTTCACTGCCTTGATCTGTGTTTAAACCGTCACCATCATCCTCTTGGTGGTGGTGGTTACGGTTCTGTGCTTAAGCTGGATTTTTGTTAA 3570 0.4076 MQTTTPVASVSHNGNPIAFVSQSSSLGPWILDSGASDHMSGNKLLFSHLTYIDTLPNITLANGSQTKCQGIGQTSPIPTLSLDSVLYVPGCPFNLISISKLTRTLPYSVTSAIESSHIIHQRLGHPSLQKLHLMVPSLSKVSTLECESCQFGKHTRSSFPGRVNKRATSPFALVHSDIWGPSRVVSCLVARSSAEAEYRAMAATACELTWLRQLLKQLKLGDVKAMKLICDNQAALHIASNPVFHERTKQIEIDCHFVRDKVLSGEIDRLPKARVVYCSATGASEPRNMAYMVRLGLWGDGSDFHDFYDFLDAMEKGGVGALELVAMDLKARGMYLCRTLSYKGAEFDIIEARLDDKMTDVYKKATEVWVELRERLIFAIEHLPGKPNTRQLWLLYWATHQRFFKHLCMSAKVPTVVRLAKQALMEDKCVVIGLQSTGEARTEDAVLKYGSELDDFISGPRELMLKFVQDHCVQYDYAMPTKPEVPPDDGPRRKRSFAGPDVSEKSRVSKVAKSEPPSDAESDEECGTVSDSDYGPEEDESAADSDYDEFQKCEIKSDEEERENLLQCSRCGKYAHQSCLVPPIRSFILEQWTCDSCKDKTVNYPPPGININEQQKSFDTPIERKKTILEMIHALDLPNNPLDDIIDQLGGQDIVAEITGRKGRLVRDPSGMGVVYEPRNTKDVTAEMVNMHEKMLFMDGKKLVAIISEAGSAGVSLQADRRVRNQKRRVHITVELPWSADRAVQQFGRTHRSNQVSAPQYRLLFSNFGGERRFASTVAMRLESLGALTQGDRRAGPSLSAYNYENDYGKRALENLYKGLKEPDLLAAVFLGGLSDIPDTIKDFNTRATAALDSVGIFVDGSHGNSKKSKENKQAIRRFLNRILGIAPEIQNRLFKSFVNNLDLLVQKARIEGSFDRGIVHLKANFIELQGTPKTVYVDQMMGASTVLFTFIFDRGVSWESANTMLKGKPKAEFGSSDDGFYMSKSEFRGKRHVILAFESSVSAMYKIVRPTTGESPRDMHRAELTGKYSKVSSLEAAKIRWEHDYEESSKQCMHGPNCKNGKSCSVGSRLQEVNVLCGVIIPIWGKIQTALSKQVKQIHRRLRIVCVETTSDNSRIVGLLVPNAAVTPVLEGLSTSSVGLTQYTIVIVAQILFPVALGCVHCLDLCLNRHHHPLGGGGYGSVLKLDFC 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01436 1189 CDD RNase_HI_RT_Ty1 188 279 - -
Tsu06g01436 1189 PANTHER STRAWBERRY NOTCH-RELATED 268 1135 IPR026741 GO:0006355
Tsu06g01436 1189 SMART PHD_3 552 598 IPR001965 -
Tsu06g01436 1189 MobiDBLite consensus disorder prediction 486 520 - -
Tsu06g01436 1189 CDD PHD_SF 553 597 - -
Tsu06g01436 1189 Pfam PHD-finger 553 599 IPR019787 -
Tsu06g01436 1189 PANTHER OS08G0223700 PROTEIN 268 1135 - -
Tsu06g01436 1189 MobiDBLite consensus disorder prediction 521 545 - -
Tsu06g01436 1189 Pfam GAG-pre-integrase domain 107 154 IPR025724 -
Tsu06g01436 1189 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 697 806 IPR027417 -
Tsu06g01436 1189 MobiDBLite consensus disorder prediction 479 549 - -
Tsu06g01436 1189 SUPERFAMILY FYVE/PHD zinc finger 541 600 IPR011011 -
Tsu06g01436 1189 Pfam C-terminal domain on Strawberry notch homologue 640 920 IPR026937 -
Tsu06g01436 1189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 536 623 IPR013083 -
Tsu06g01436 1189 Pfam P-loop containing NTP hydrolase pore-1 268 363 IPR039187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01436 Tsu-Chr6 14221654 14231923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01436 188 261 Receptor kinase-like Gene Family AT4G23160 55.405 7.97e-19 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu06g01436 Helicase_C_4 2.4e-102 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01436 - - mtr:MTR_2g063813 1119.38