Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01433 ATGTTACAACAACCGCAACCACCACCTCTCCCCGCCACCAGGGCACGTTGCGCCGGTTGCCGGACATACTTTCACGCGGCGCAAGGTGTGACGGAGTTACCATGTCCTAACTGTCAAATGCCACACGTTTTCTCCCTCGATCCAGCCGTTATTCGCTGTCCTGCTTGTAAGGCTCGCGTTAACGGTCCTAGTAACCTCGCGAAGTTCCCTTGTCCTCAGTGTCGAGTTGAACTTGATGTTCATGTTGATGGTGAAGACGTCAATGAGCTGCTTAATGAGGTGGAGcaggatgaagatgatggtggtATGGCTGGAGAAACATTTACAGATTATCGTCCATCAAAGCTATCTATCGGACCTCCACATCCAGATCCGATTGTGGAAACATCTTCATTGTCTGCAGTGCAGCCACCTGAGCCTACTTATGATCCAAAGATTAAGGATGAGTTGCAATGTTTGAAGACTTTGTCATGCTTGCAGATTGAGACTTTGGTCTATGCTTGTCAGAGACACCTTCAACACATTCAAAATGGTGCTAGGGCGGGATTCTTTATCGGAGATGGAGCGGGTGTAGGTAAAGGTCGAACTGTTGCTGGGCTAATCTGGGAGAACTGGCACCATGGGAGAAAGAAAGCCTTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCCAGAAGAGATTTGGATGATATGGGTGCAAGCTGCATTGAAGTGCATGCTTTGAACAAGCTTCCTTATACTAAGCTTGACACGAAGACTGTTGGAGTTAGGGAGGGAGTTATTTTCTCGACATACAGTAGCCTCATAGCATCATCTGACAAAGGCCGTACCCGTATGCAGCAGCTTGTGCAGTGGTGTGGACCTCGGTTTGACGGTCTTATAATTTTTGACGAGTGTCATAAAGCAAAGAATTTGGTTCCTGAAAAGGGTAAGAAGCCAACAAGAACCGGTGAAGCAGTACTTGATATCCAGGCTCAACTACCTGAAGCCCGTGTGGTTTATTGCTCAGCTACTGGTGCATCTGAACCTCGCAATATGGCTTATATGGTTCGACTTGGCCTTTGGGGAGTCGGAACTTTTTTCAGTGATTTTGGTGAATTTCTAGATGCGCTTGAAAAAGGGGGTGTCGGAGCTCTAGAGCTAGTTGCAATGGACATGAAAGCAAGgggcATGTATTTATGTCGTACGCTTAGCTACAAGGGTGCTGAGTTTGAAGTTATTGAAGCAACATTAGATGATAAAATGACGAATGCATATAAAAAGGCTACAGAAGTTTGGGTGGATTTGCGTGAGAAATTGCTTTCTGCCATTGCCCTCCTACCTGAGAAACCTGATACTAGACTACTATGGAGATTATACTGGGCAACCCACCAGCGCTTCTTTAGACACTTGTGTATGTCTGCCAAAGTCCCTACGGCAGTGAGACTTGTGAAACAAGCATTAAGGGAAGACAAGTGTGTAGTCATAGGTCTGCAGAGCACCGGGGAAGCAAGAACGGAGGAAGCTGTCTCAAAATACGGCTCTGAGCTTGATGACTTTATTTCCGGACCTCGTGAGTTAATGCTAAAATTTGTTGAAGATTATTACCCTTTGCCAAAAAAGCCTGAACTTCTCCCAGATGATGGTGTAAAGGAGCTTCAAAGGAAGAGGCACTTGGCAAGTCCTGACGTTTCAGGAAACTCTAGAGCCAGAAAAGTAGCCAAATTGCCGCATCCTAGTGATGCTGATAGTGATGAAGAATCTGAAACTGCCTCTGTTCCTGAATCTTCCGATTCTGATTACGGACCAGAAGGGGATGAAAGTGCTGCCTCTGATGTTGAATCTTCCGACTCTGATTATGACGAGTTTCAGAAATGTGAAATTTGCAGTACTGAAGAGGAAAGGGAAAACTTGTTGCAGTGTTCCTTCTGTGGAAAATACGCTCATCAATCATGCTTGGTGCCCCCAATTCGCGATATTATTCTTAAGGAATGGGCATGTAATTTGTGCAAAAATAACAGTGTTGAATATCTCCCTTCTGGAACAAACATAATTGAACAGCAGAAGAGTTATGATACGGCCATAGAGAGCAAGAAGAAAATATTAGAGACGATTCGTGCTTTGGATCTTCCAAACAATCCCTTGGATGATGTTATTGACCAGTTAGGAGGCCATGACAAAGTTGCCGAAATAACAGGAAGGAAAGGAATGCTTGTGAGGGCCCCTAGTGGAATGGGTGTGGTTTATCAGACTCGAAATACAAAAGATGTCACTGCTGAGATGGTCAACATGAATGAAAAAATGCTCTTCATGGAAGGTAAGAAATTAGTGGCTATCATCTCTGAAGCTGGATCAGCTGGTGTTTCGTTGCAGGCAGACAGAAGAGTGAGAAATCAGAAAAGAAGGGTTCATTTAACTCTAGAACTTCCATGGAGTGCCGACCGAGCAATTCAACAGTTTGGAAGAACTCATAGATCAAATCAAGTCTCAGCACCAGAATACAGGTTACTATTTACCAACCTTGGTGGAGAACGCCGGTTTGCATCAGCTGTTGCTAAGAGACTAGAATCCCTTGGAGCGTTGACTCAAGGGGATCGTAGGGCTGGACCTTCATTAAGTGCATATAATTATGATAGTGCTTATGGGAAGCGGGCTCTGATGGTTTTGTACAGAGGAATAATGGAGCTGgATCCTCTTCCCGTTGTACCTCCAGGATGCTTATCTGACAGACCAGATACAATCAAAGGTTTTATTATGCAGGCAAAAGCTGCTATTGCTTCTGTTGGAATTTTTAAGGATGCCATTCTTGGAGATGATATAGATCCTAGGTGGTTATCTTGCCACATTGATGATAAAGACATACATGATATTGGGCGATTTCTCAACCGGATTTTGGGAATAGCTCCTGAGACTCAGAAtagGCTATTTGAGTTATTTGTGAATATCTTGGatcttcttgttcaaaaagCTCGCATTGAAGGTAACCTTGACACAGGCATTATTGACTTGAAAGCTAATGTCATTAAACTGAAAGGGACTCCAAAGAATGTCTATGTTGATCAAATGAGCGGGGCTTCAACTGTTCTGTACACATTCATCTTGGATCGTGGGGTTTCATGGGAGTTGGCAAATACCATGCTGAATGAGACGCAGAAAGCTGGATTTGGTTCATCAGGTGACGGCTTCTACAAGTCCAAGAGGGAGTGGTTGGGAAAACGTCATGTTATTTTAGCATTTCAAAGTTCTGCTCCGACTATGTATAAGATAGTTCGTCCCACTACCGGAGAATCACCTCGGGATATGCATCTGACAGAATTAACtagaaaatattcaaaagttTCATCTTTGGAGGCGGCCAAAATTGGTTGGGAGGACGACTATGAAGCTTCATCTAAACAGTGTATGCATGGTCCCAAGTGTAAACTGGGTAAATTCTGTTCAGTTGGCTCAAGACTACAGGAAGTAAATGTCTTAGGTGGTGTCATTCTTCCTGTTTGGGGGAAAATACAATTGGCTCTTTCTAAGCAGGTCCGACATATTCATAAGAGGTTACGGATTGTTCGTGTTGAAACTACATCAGATAACAGGCATATAGTTGGGCTTCTTGTACCTAATGCAGCAGTTGACACTGTGCTTGAagGTTTACATTGGCCTATAGAACTGGATGATTGA 3654 0.433 MLQQPQPPPLPATRARCAGCRTYFHAAQGVTELPCPNCQMPHVFSLDPAVIRCPACKARVNGPSNLAKFPCPQCRVELDVHVDGEDVNELLNEVEQDEDDGGMAGETFTDYRPSKLSIGPPHPDPIVETSSLSAVQPPEPTYDPKIKDELQCLKTLSCLQIETLVYACQRHLQHIQNGARAGFFIGDGAGVGKGRTVAGLIWENWHHGRKKALWISVGSDLKFDARRDLDDMGASCIEVHALNKLPYTKLDTKTVGVREGVIFSTYSSLIASSDKGRTRMQQLVQWCGPRFDGLIIFDECHKAKNLVPEKGKKPTRTGEAVLDIQAQLPEARVVYCSATGASEPRNMAYMVRLGLWGVGTFFSDFGEFLDALEKGGVGALELVAMDMKARGMYLCRTLSYKGAEFEVIEATLDDKMTNAYKKATEVWVDLREKLLSAIALLPEKPDTRLLWRLYWATHQRFFRHLCMSAKVPTAVRLVKQALREDKCVVIGLQSTGEARTEEAVSKYGSELDDFISGPRELMLKFVEDYYPLPKKPELLPDDGVKELQRKRHLASPDVSGNSRARKVAKLPHPSDADSDEESETASVPESSDSDYGPEGDESAASDVESSDSDYDEFQKCEICSTEEERENLLQCSFCGKYAHQSCLVPPIRDIILKEWACNLCKNNSVEYLPSGTNIIEQQKSYDTAIESKKKILETIRALDLPNNPLDDVIDQLGGHDKVAEITGRKGMLVRAPSGMGVVYQTRNTKDVTAEMVNMNEKMLFMEGKKLVAIISEAGSAGVSLQADRRVRNQKRRVHLTLELPWSADRAIQQFGRTHRSNQVSAPEYRLLFTNLGGERRFASAVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALMVLYRGIMELDPLPVVPPGCLSDRPDTIKGFIMQAKAAIASVGIFKDAILGDDIDPRWLSCHIDDKDIHDIGRFLNRILGIAPETQNRLFELFVNILDLLVQKARIEGNLDTGIIDLKANVIKLKGTPKNVYVDQMSGASTVLYTFILDRGVSWELANTMLNETQKAGFGSSGDGFYKSKREWLGKRHVILAFQSSAPTMYKIVRPTTGESPRDMHLTELTRKYSKVSSLEAAKIGWEDDYEASSKQCMHGPKCKLGKFCSVGSRLQEVNVLGGVILPVWGKIQLALSKQVRHIHKRLRIVRVETTSDNRHIVGLLVPNAAVDTVLEGLHWPIELDD 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01433 1217 PANTHER STRAWBERRY NOTCH-RELATED 89 1217 IPR026741 GO:0006355
Tsu06g01433 1217 MobiDBLite consensus disorder prediction 549 613 - -
Tsu06g01433 1217 Gene3D - 156 352 IPR027417 -
Tsu06g01433 1217 Pfam PHD-finger 620 666 IPR019787 -
Tsu06g01433 1217 ProSiteProfiles Zinc finger PHD-type profile. 617 667 IPR019787 -
Tsu06g01433 1217 Pfam C-terminal domain on Strawberry notch homologue 707 996 IPR026937 -
Tsu06g01433 1217 Pfam P-loop containing NTP hydrolase pore-1 121 421 IPR039187 -
Tsu06g01433 1217 MobiDBLite consensus disorder prediction 594 611 - -
Tsu06g01433 1217 SUPERFAMILY FYVE/PHD zinc finger 606 667 IPR011011 -
Tsu06g01433 1217 CDD PHD_SF 620 664 - -
Tsu06g01433 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 375 IPR027417 -
Tsu06g01433 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 764 867 IPR027417 -
Tsu06g01433 1217 PANTHER OS08G0223700 PROTEIN 89 1217 - -
Tsu06g01433 1217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 567 672 IPR013083 -
Tsu06g01433 1217 SMART PHD_3 619 665 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01433 Tsu-Chr6 14143479 14159252 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu06g01433 AAA_34 1.3e-131 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01433 - - gmx:100808670 1772.67