Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01424 ATGGACAACATTTGTCCAAAAACTCTAAACGGTGTTGAGAAAAGCGAAGCTCGTATAGGTGGGATGCATAAAATTAGTTCAATTGCGTTTGAAATGGTGAAATTAATTGAGACAGCACCAGCCCCAATATTTGCGGTTGATTCAGATGGTCGAATCAACGGATGGAATGTAAAAATTGCTAAATTGACAAGTCTGCAGGCCAGTAAAGCAATGGGAAAATCCTTAGTAAATGAAATTGTAGACGCGGACTCACGTGAAACTGCGACAAATATTCTGAGAAGTGCTTTGCATGATGAAAAAAATGTTGAGTTGAAAATAAATCGTTTTGTGCTTCATCGAGAAAAGGAAGTTATATACCTCATGGTTAGTTCTGTCACAAGTGGAGACTACACAAATGCTATAGTTAGGGTATGCTTTGTAGGCCAAGACATCACTTTCGAGAAAGTGGTTCTAAACAAATCTGTTAAGTTGGAAGGCAATTACAAAGCTATCATGCAGAGTCTTAATCTGCAAATTCCACCCATATTTGTTTCTGATGAAAATGCTTGTTGTTCTAAATGA 561 0.3743 MDNICPKTLNGVEKSEARIGGMHKISSIAFEMVKLIETAPAPIFAVDSDGRINGWNVKIAKLTSLQASKAMGKSLVNEIVDADSRETATNILRSALHDEKNVELKINRFVLHREKEVIYLMVSSVTSGDYTNAIVRVCFVGQDITFEKVVLNKSVKLEGNYKAIMQSLNLQIPPIFVSDENACCSK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01424 186 PRINTS Phytochrome signature 142 162 IPR001294 GO:0006355|GO:0009584
Tsu06g01424 186 PRINTS Phytochrome signature 122 139 IPR001294 GO:0006355|GO:0009584
Tsu06g01424 186 PRINTS Phytochrome signature 31 47 IPR001294 GO:0006355|GO:0009584
Tsu06g01424 186 PRINTS Phytochrome signature 50 65 IPR001294 GO:0006355|GO:0009584
Tsu06g01424 186 PANTHER PHYTOCHROME 13 184 - -
Tsu06g01424 186 SMART pas_2 30 97 IPR000014 -
Tsu06g01424 186 TIGRFAM sensory_box: PAS domain S-box protein 35 147 IPR000014 -
Tsu06g01424 186 Pfam PAS fold 32 144 IPR013767 GO:0006355
Tsu06g01424 186 Gene3D PAS domain 30 148 - -
Tsu06g01424 186 ProSiteProfiles PAS repeat profile. 28 99 IPR000014 -
Tsu06g01424 186 PANTHER TWO-COMPONENT HISTIDINE KINASE 13 184 - -
Tsu06g01424 186 CDD PAS 39 144 IPR000014 -
Tsu06g01424 186 SUPERFAMILY PYP-like sensor domain (PAS domain) 35 139 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01424 Tsu-Chr6 13990051 13990918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01424 21 184 Histidine Kinase Gene Family AT4G16250 51.205 5.70e-51 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01424 K12123 - gmx:100808192 221.861