Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01423 ATGCCACAACATTGTTCACTCCTTCTTCTGGGACTTCCCTTGTATATCATGGCTACTAGGGAAATTTCGCGTTTGAAACTTATTCGGGTTCATGCAAGGACTACAGAGAAGCCATTTTATGCCATGCTGCATAGGATTGATGTTGGCGTTGTGATTGATCTAGAGCCTGTAAGTTCTAGTGGTCTTGCCTTGTCACTTTCTGTTCAAAAGCTTACTAGATATGATAGGGTTATGATTTATAACTTTCATGAGGATGATCACGGTGAGGTTGTATCTGAGATTCGAAGATCTGATTTAGAACCTTATTTAGGTTTTCATTATCTTGCTATTGATATCCCTCAAGCTGCTCGGTTTCTCTTCAAGCAAAATCGAGTGAGACTGATTTCTTATTGTCATGTTAATCCAGTTAAGCTAGGCATAACTCCAACTAAATTACAGGTTAAAGACATTGTGGAATGGCTACTTGGTAATTATGGAGACTCGACAGGTTTGGCCACAGAAAGTTTGGCAGATGCTAGTTATCCAGGTGCTACTTTTTTGGGAGATGCAATTTGTGGTATGGCCTCGGCAAGAATCAGTCCAAGACATATCTTGTTCAGGTCTTCCACTGCTAAGGAAATAAGGTGGAGATGA 633 0.4044 MPQHCSLLLLGLPLYIMATREISRLKLIRVHARTTEKPFYAMLHRIDVGVVIDLEPVSSSGLALSLSVQKLTRYDRVMIYNFHEDDHGEVVSEIRRSDLEPYLGFHYLAIDIPQAARFLFKQNRVRLISYCHVNPVKLGITPTKLQVKDIVEWLLGNYGDSTGLATESLADASYPGATFLGDAICGMASARISPRHILFRSSTAKEIRWR 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01423 210 SUPERFAMILY GAF domain-like 136 209 - -
Tsu06g01423 210 Pfam Phytochrome region 135 209 IPR013515 GO:0006355|GO:0009584
Tsu06g01423 210 PANTHER PHYTOCHROME E 149 208 - -
Tsu06g01423 210 PANTHER PHYTOCHROME E 21 65 - -
Tsu06g01423 210 PANTHER PHYTOCHROME E 68 138 - -
Tsu06g01423 210 PANTHER TWO-COMPONENT HISTIDINE KINASE 68 138 - -
Tsu06g01423 210 PANTHER TWO-COMPONENT HISTIDINE KINASE 21 65 - -
Tsu06g01423 210 PANTHER TWO-COMPONENT HISTIDINE KINASE 149 208 - -
Tsu06g01423 210 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 67 138 IPR016132 -
Tsu06g01423 210 SUPERFAMILY GAF domain-like 68 139 - -
Tsu06g01423 210 Pfam PAS fold 17 57 IPR013654 GO:0006355
Tsu06g01423 210 Gene3D - 63 147 IPR029016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01423 Tsu-Chr6 13988714 13989887 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01423 138 209 Histidine Kinase Gene Family AT4G18130 57.333 2.03e-21 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01423 K12123 - gmx:100808192 167.548