Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01420 ATGGCTCCAATGACTCTACCACCTGGATTCAGGTTCCACCCTACAGATGAAGAACTCGTGGCTTACTacttagaaagaaaaataactgGTAGAACTATAGAGCTTGATATCATTGCAGAAGTTGATCTCTACAAATGTGAACCTTGGGATTTACCAGAAAAATCATTTATTCCAAGCAAGGACATGGAGTGGTATTTTTATAGTCCAAGAGATAGAAAGTATCCAAATGGGTCAAGAACAAATAGAGCAACAAGAGGTGGTTATTGGAAAGCAACTGGAAAAGATAGGGCAGTTAATTCTCAAAAGAGACAAGTTGGAATGAAGAAGACACTTGTTTATTACAAAGGTAGAGCACCTCATGGGATTAGAACCAATTGGGTTATGCATGAATATCGTCTCATTGAACCATATCCTGgtgcttctctctcttctttaaAGgattcCTATTCGTTGTGTCGAATTTTCAAGAAGACAATTCAAATTCCAACAAATAATAATGAGGAACAACTTGAGGAAACAAAGAAGGAAATGATGTTAGAAGAGCAAGTGCAAAGGGAAGACTCGAGTGGCACTGAgaattcaaaagaaataatggaaactttggataaaaaaattcttaatcaAGATGAACATCCAAAATTTCCATGTGATGCTTCTTCTTCTGATGTCACTCAAGGAACATGTACACCAACAAATACATGTAATAATATAACAGATGATTTTCATGCACAATTTGCTTGTGATGAAGCAAATAGTTCAGCTATTTCTTTTCCAATTGGAATTGGCTACCCCTCAAACTTATTTCAGGATATAGAAATACCTATGTATGGTGGTTTCCATAATCAATTTCCACAAACACCTTTTATGATGGATGATTTCCCACAAATTGAGACAAAGTCAATATTGAAGCCAGATATGACTAATGATGACTGCTTTTTGTATGACAAATATAGAGACTGTATGAATGGAACACTAGAAGAAATCATCTCTTTATGTTCCTCTCACGATCATTCTTTGGCTTTTCCTATGCTATAG 1035 0.3324 MAPMTLPPGFRFHPTDEELVAYYLERKITGRTIELDIIAEVDLYKCEPWDLPEKSFIPSKDMEWYFYSPRDRKYPNGSRTNRATRGGYWKATGKDRAVNSQKRQVGMKKTLVYYKGRAPHGIRTNWVMHEYRLIEPYPGASLSSLKDSYSLCRIFKKTIQIPTNNNEEQLEETKKEMMLEEQVQREDSSGTENSKEIMETLDKKILNQDEHPKFPCDASSSDVTQGTCTPTNTCNNITDDFHAQFACDEANSSAISFPIGIGYPSNLFQDIEIPMYGGFHNQFPQTPFMMDDFPQIETKSILKPDMTNDDCFLYDKYRDCMNGTLEEIISLCSSHDHSLAFPML 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01420 344 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Tsu06g01420 344 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Tsu06g01420 344 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Tsu06g01420 344 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Tsu06g01420 344 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 205 - -
Tsu06g01420 344 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01420 Tsu-Chr6 13950632 13955886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01420 1 339 NAC Transcription Factor Family AT1G54330 50.291 1.20e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu06g01420 NAM 3.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01420 - - gmx:100808325 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01420 06 13950632 13955886 Tsu06g01420 06 13950632 13955886 ECH