Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01419 ATGGGACATCGTTGTTGTAACAAACAAAAGATCAAAAGAGGATTATGGTCTCCAGAAGAAGATGATAAGCTTGTTACATATATCATTACTCATGGACATAAAAGTTGGAGTTCTGTTCCAAAGCTCGCAGGcactatttctctcttttctataTACTTATGTGGTAAGAGTTGCAGATTGAGATGGACAAACTATTTGAGGCCAGATCTAAAAAGAGGTTCCTTCACTGTAGAAGAAGAACAAATCATAATTGACATACATAGAATTCTTGGAAACAGATGGGCCCAAATAGCAAAGCATCTACCTGGTAGAACCGACAATGAAGTGAAGAATTTTTGGAACTCATGTATTAAAAAGAAACTTATTTCTCAAGGCTTAGATCCAAACACtcacaatttactttcttcttcttctcatcatAAGAGAAACAACTTATCATACCAAAAATCCAATTCCATTTTCATTCTTGGTTCGCAAATGCCACCAAATGCTACTAATCTCATTGAAACAACTCAAACTTTTGCTTCACCAAATATTCTTCAAACTCCTTCCACATTTGCTCCCTCTAACCAATATCAAACATCTTTCAATGCAATATCAAATGATCAACTTTGTGTTTCCGAGCAAGAACAACCTCGAACATTAACCGATAACATATCAAACATATGTTCTACTTCTTGCAATGAGAATAGCATTTGGGTTTCAAGAGTTGATGATTTTAGAGATTCAACATTTGAAAAAGGAATTCAAGCTCAAGtggagaaagagaagaagatatGTGATGACAAAGAAGTTAATAATGAGAAGGAAGATATTGAAATGAATAGTTGTTTTGAGAATTCTAACTTTGATTTTGGGTTGTTGGAGAGTGTACTTAACTCTGAATTTATATCTCATGATCTAGATTATATGGATGATCTTGCATGGAACTTTTAG 936 0.3162 MGHRCCNKQKIKRGLWSPEEDDKLVTYIITHGHKSWSSVPKLAGTISLFSIYLCGKSCRLRWTNYLRPDLKRGSFTVEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPNTHNLLSSSSHHKRNNLSYQKSNSIFILGSQMPPNATNLIETTQTFASPNILQTPSTFAPSNQYQTSFNAISNDQLCVSEQEQPRTLTDNISNICSTSCNENSIWVSRVDDFRDSTFEKGIQAQVEKEKKICDDKEVNNEKEDIEMNSCFENSNFDFGLLESVLNSEFISHDLDYMDDLAWNF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01419 311 PANTHER MYB DOMAIN PROTEIN 55 1 299 - -
Tsu06g01419 311 Gene3D - 10 72 - -
Tsu06g01419 311 Gene3D - 74 151 - -
Tsu06g01419 311 CDD SANT 16 66 IPR001005 -
Tsu06g01419 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Tsu06g01419 311 Pfam Myb-like DNA-binding domain 13 66 IPR001005 -
Tsu06g01419 311 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Tsu06g01419 311 PANTHER BNAC05G40480D PROTEIN 1 299 - -
Tsu06g01419 311 SMART sant 71 119 IPR001005 -
Tsu06g01419 311 SMART sant 12 68 IPR001005 -
Tsu06g01419 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 66 IPR017930 -
Tsu06g01419 311 SUPERFAMILY Homeodomain-like 10 113 IPR009057 -
Tsu06g01419 311 CDD SANT 74 114 IPR001005 -
Tsu06g01419 311 ProSiteProfiles Myb-like domain profile. 8 66 IPR001005 -
Tsu06g01419 311 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01419 Tsu-Chr6 13925835 13927764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01419 1 311 MYB Transcription Factor Family AT3G12720 47.319 9.86e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu06g01419 Myb_DNA-binding 4.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01419 K09422 - gmx:100791209 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01419 06 13925835 13927764 Tsu06g01419 06 13925835 13927764 ECH