Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01400 ATGAACTCCGATGGCCGAAAATGGGACCGGAAAGACAACCGAATTTCCAAGAAGCAGAAACTAATCAACACCGCTGAAGAAGAACTCGAAGCAAAACTAGGGTTTGATATTTTCTCAGAAGGTGAAAAACGACTTGGATGGTTACTCACTTTTTCATCCTCATCTTATGAGGATGAGGATACCCGCAAAGCCTATAGTTGCGTTGATCTTTACTTTGTCACACAGGATGGGTCCTCATTCAAGACAAAATACAGATTTCGCCCTTATTTCTATGTAGCTACAAAGAATAAAATGGAGATGGATGTTGACGCATACCTGAGACGACGTTATGAAAGCCAGATTGCAGATATTAAAATTGTAGAAAAGGAAGACTTGGATCTTAAAAACCATTTGTCTGGATTGAGGAAATCTTATTTAAAGCTTTCATTTGATACCGTGCAACAACTGATGAATGTGAGGAATGACCTGATGCATGTTGTTGAAAGAAACAAGGCAAAGTCTGATGCTGCAGAAGCATATGAGTCCATATTAACAGGGAGAAGAGAACAAAAACTTCAAGACTTTCTAGATTGCATAATTGATCTTCGTGAATACGATGTTCCTTACCATGTTCGCTTTGCTATCGACAACGATATACGGTGTGGTCTGTGGTATGATGTTGTCGTGTCCAATGATGGGGTTACACTTGAGAGGAGAACAGATCTTCTGCAGCGTGCTGAAGTTCGTGTTTGTGCATTTGATATCGAAACCACAAAACTTCCATTGAAGTTTCCTGATGCTGACTATGATTCAATTATGATGATTTCATATATGGTAGATAAGCAAGGGTATTTAATCATAAATAGAGAGTGTGTTGGGGATGATATAGAGGATTTAGAGTTCACTCCGAAACCAGAGTTTGAAGGGTGTTTCAAGGTGACAAATGTTCAAAATGAGATTGAGCTTCTTAGATTGTGGTTTTCTCATATGCAAGAGGTGAAACCTGGCATCTATGTGACTTATAACGGTGATTTCTTTGATTGGCCATTCCTGGAACGACGGGCAGCCCATCACGGGTTCAAAATGAGTGATGAACTGGGGTTTCAATGTGACATGAATCAAGGGGAATGTCGTGCTAAATTTGCTCCCCATTTAGATTGTTTTGCATGGGTTAAACGTGACAGTTATCTTCCTCAGGGGAGCCAAGGCCTCAAGgCTGTAACAAAAGCCAAGTTAGGTTATGATCCAGAGGAGGTGAACCCTGAGGACATGGTGCGCTTTGCAAAGGAAAAACCTCAGATGATGGCTTCCTATTCTGTTTCTGATGCAGTGTCAACATATTACCTCTATACAACTTATGTTCATccctttattttctctcttgCTACTATCATACCCATGTCACCAGATGAGGTTTTGCGCAAAGGCAGTGGGACCCTCTGTGAAATGTTGCTTATGGTTCAGTCATACAAGGCTAATGTTATCTGCCCTAACAAGCACCAATCTGATGCGGAGAAGTTTTATAAGAATCATCTTCTTGAGAGTGAGACGTACATAGGTGGCCATGTTGAATGCCTAGAAAGTGGTGTATTTAGATCTGATATTCCATGTAGTTTTACCCTCGAGCCATCTGCCTTTGAGCAATTGATCAACAACCTTGATCGAGATCTACAATATGCTATAAGAGTAGAGGGTAAGATGGATTTGGATTCTGTCTCAAATTATGATGAAGTGAAGAATTCTATCTTGGAAAAGCTTGTAAAATTACGAGATGCGCCGATACGTGACGAATGCCCACTCATTTATCATTTGGATGTAGCTGcaatgtatccaaacataatttTAACAAACCGACTTCAGCCTCCATCAATTGTTACAGATGAGATTTGCACTGCATGTGACTTTAACCGTCCAGGAAAGACTTGTCTACGCAAGCTTGAGTGGGTTTGGCGTGGATCAACATTCACGGCAAAGAAAAgTGACTATTATCATCTAAAGAAGCAAATTGAGTCAGAGTTTGTTGATGGGACAAATGAAAGGTCATCAAAATCTTTTCTTGACCTGCCCAAGGCCGAGCAACAAATAAGACTAAAAGATCGTTTAAAGAAATACTGCCAAAAGGCATATAAACGGGTACTTGACAAGCCAGTTACCGAACTCCGTGAAGCTGGAATCTGCATGCGCGAAAATCCATTTTACGTTGACACTGTTCGCAGTTTCCGGGATAGGAGGTATGAATATAAAGGCCTTAACAAGGTTTGGAAGGGAaaactatcagaggccaaagcCAGTGGAAATTCTATGAAGATCCAGGAAGCACAAGACATGGTAGTGCTTTATGATTCATTGCAACTTGCTCACAAGTGTATTCTTAATTCCTTTTATGGATACGTAATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGTGTTGTCACATATACTGGtgcaaaaataattcaaaatgcTCGCTTGCTGGTAGAGAAAATAGGAAAACCACTTGAACTTGACACCGATGGTATCTGGTGTGCACTTCCTGGGTCGTTTCcagaaaatttcacttttaaaacaATaGACTCAAAAAGGAAGTTGACAATCTCATACCCTTGTGTTATGCTTAATGTTGACGTGgcaataaataatacaaatgaTCAGTACCAGACACTCACAGATCCAAATAGGAAAACTTATACAACTCATAGTGAATGCTCTATTGAATTTGAGGTGGATGGACCATACAAGGCAATGATTATACCTGCTTCCAAGGAGGAAGGAATTTTAATTAAGAAGCGATATGCTGTTTTTAATGATGATGGATCCCTTGCAGAGCTGAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATCAAAGTTTTCCAGGCTGAGCTTTTTGAGAACTTTCTCCATGGCTCAACCTTAAAGGAATGCTATTCAGAAGTTGCTTTTGTGGCAAACCGCTGGCTCGATCTTCTTGATAACCAAGGACAGGATATTGCAGATAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAGTCTTTAGCTGATTATGGTCAGCAGAAGTCTTGTGCTGTTACCACCGCTAAACGTCTTGCTGACTTTCTTGGTGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCTAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTGGCAATATTTCAAACTGATGCTGAAGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCAGATGTTGGTATTCGCTCTATAATTGACTGGTCCTATTACAAGCAGCGGCTTGGTTCTGCAATTCAAAAAATTATCACTATTCCTGCTGCAATGCAAAAgGTTGCAAATCCTGTCCCTAGGGTTGTTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAAAGAAAAATAGATGATACCTTTAAGTCAATGAACAAGAATGAGAGCTCAAAAAAGAATAATGATTCTAATGGCATGGAGGATGAGATTGTTAATGACATGGAGGACTTTGGAAACAGGGGCAGGAATTCTACATCTGGACCTAGACCAATTATACGGCATTACAAAGCTAACAATGAACAACATTCAGAGAAGTTCAACGGGCATGAAGATTCAGAGCAACAGCATATTGGCAGTAGCAACATAAATCAGTCACTTTCACTGTCACAACAAGATGAAATATGCGAAAATGTTGATAGAATTGTAGATTATCAAGGGTggcttcaaataaaaaagaggaaGTGGAAAAGTATTctgggaaagagaaagaagcaAAGATTGGAGAATTCAAAGAGATCTGATCATTTAAATGGCAGTCTTGAACAAACCAATGGTAAGATGAATCACGGAAAAACTAATGTCAGTTCATATTTTAGAAGGCAGGAGGTAGTCCTAACACGGTGCCACTGGCAGATAATACAGCTAGTCCAAAGTTCACAAGTTGGCCAATTTTTTGCTTGGGTTGTTGTTGATGGGATTATGCTCAAGATTCCTATTTCTGTTCCCAGAGTCTTTTACCTTAACTCTAGATCACAAAATGAAGAGTTTTCGTGCAAACGTGTCAACAAGACTCTTCCTCATGGAAGACATAGTTATAACCTGTATGAGGTCACAATTAATGAAGAACAATATAAAGAAGAAAGCAAAAAACTTGCCGCTCTTCTAGCAGATCCTGATGTTGAGGGAATATATGAAACCAAGGTGCCACTGGATTTCAACGCTATAGTCCAGCTTGGTTGTGTTTGTAAGGTGGATAAAACTGCTAAAAAACGTAGTCTACAAGAGCCATGGAATTTGAGTGAGTTGCACATGAAGACCACAACAGAATGTGCTTATCTTGAACAAtcaatatcttttttttacttatacCATAGCATCTCAGAGGGACGAGCTATATATGTTGGATATTTTCCTGGATCACAAGCAATAACTTTTGTGGTAGTTAATCCTTACCAAAACAAGGACTTATCACCAATTTTTCTTGAAAGACAATTTCGTGATGCTTGCAGAGCTTTGTCTATTGAGCCACCTCTGAGgaatgacattaattttaagGTGGAATATGTTGCACTTGTCAAGGATGCTGAAACAGTAATGCAAAGCGCAATAAATGATCAcagGAGCGAACATCATGGGCCTATGGTTGCTGTCATCGAATGCCCAGATGTTCAACTATTAAAACTAGGCATTCGAGCTCTAGATGATTTTCCATGCCTGACTATTCCTTCTAATGCACGTGATAGTCAATATCAGatACTTGGATGGCAACAAGTTGCTGCTAAACTTGGAATGCAACGTTGTGCGGCATCAGTCCAGTGGCTAAATGAGAGAATTGCTCTATCCAGATATGCCCATGTACCACTGGGGAACTTTGAATTTGACTGGCTTATGTTTACAGTGGATACCTTTTTTTCTAGAGCATTGCGTGATAATCAACAGGTGCTTTGGATATCTGATGATGGTTTTCCAGATTTGGGTGGCAACAATGGTgaagaaaactgttttttagaTGAGGTGCACCAATCTGTTTGTACGTTTCCTGGAGCTTATAGAAAAATTACTGTGGAGATAAAGATACACCACCTGGCTGTAGATGCCCTTTTAAAATGCAACCAAGTTAATGAAATGGAAGGAGGTGCTTTGTTAGGATTGGATCATGAATTTGATTCTGAAGCATTTCCCGTGAATGGTCAGAATGGCTTTGATGAGTCTACTTCATGCAAACATGCCTTTCGAGTCCTAAAACATTTGATCCAGCGGTGCCTTTCAGATGCAGTCACATCTGGAAATGTTTTTGCTGATGCAATATTGCAACATCTGTATAGATGGCTTTGCAGCCctcaatcaaaacttcatgATCCCGCTCTTCACCAGTTACTCCACAAGGTCATGCAAAAGGTCTTCGCGTTGTTGTTGGCAGAGTTCCGCAAGTTGGGTGCAACAATTGTTTTTGCAAACTTCTCGAAGATTATTATAGACACAGGAAAATATGATTTGTCTACAGCCAAAGCATACTGTGATAGTTTGTTAAGAACTATACAATCTAGGGACCTATTCGAGTGGATTGAGCTTGAACAACTGCAGTTTTGGTGCTCATTGCTATTCATGGACCAGTATAATTACGGTGGAATACCAGCAAAGTCTGATGAAGCCATGGATGATGAGTCTCAAGTTGACATAATATCAAGTTGGAATATTGCCGAATACTTGCCAAAAAAAATCCAAGACCATTATGTTTTCATAGTTTCTCAATTCATGTATATTCCTTGGAACTATGCACGAAAACAAGCAGCAATCAGGGCTTCCGTGCTGAGTGGAGACTCCTGCACCCCATCAATTAATATTGGCGCTGCAGAGGCTTTCGAATCAGAAATAACTGAATATATTAAAGAGCAGATTAGCTCTTACTTCACTGACAAACTCCTTGGCGTTGTTCGTGATATTGTTCTTCATATGAAGGGGATGGGCAGATCAGAAAACGACCCGAGTACATCGTCTGGCCTTCCTCAACTTGCGGATGATCTCCATAGAGGGGATGCAGCCTTGGAGTTTATCAAGCATGTCTGTGCCGTCCTTGCCCTCGACCAAAGTGTGCAGCATGATGTTCATGTCATgagaaaaaatttgttaaaatatgtTCGTGTCAGGGAGTTTGCTCCAGAAGCAGAGTTTCACGATCCTTGTCATTCCTTCACATTACCCAATGTTATCTGCAGCTATTGTAATGACTGCAGAGATTTGGACTTGTGCCGCGATCCGACTTTATTGACCGAAGAGTGGCATTGTGCCGTGCCTCAGTGTGGCCAGCCTTATGACCGTGAGGTGATGGAGAATGCTCTTCTTCAGATTGCACGACAAAGGGAGCGGCAATACCACTTGCAAGATCTGGTGTGTGTCAGGTGCAACCAGGTGAAAGCTGCACATTTGGCTGAGCAATGTGCATGTGCAGGCTCATTTAAGTGCAAGGAAGATGCAACAGAATTTCGCAAAAAAATGCTGGTTATCTTCAACATAGCTTCTCGTCAGAAATTCCAACTTCTTCAAGAATGTACCTCCTGGATGTCAGAACTCAACATTTAA 6624 0.3943 MNSDGRKWDRKDNRISKKQKLINTAEEELEAKLGFDIFSEGEKRLGWLLTFSSSSYEDEDTRKAYSCVDLYFVTQDGSSFKTKYRFRPYFYVATKNKMEMDVDAYLRRRYESQIADIKIVEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMNVRNDLMHVVERNKAKSDAAEAYESILTGRREQKLQDFLDCIIDLREYDVPYHVRFAIDNDIRCGLWYDVVVSNDGVTLERRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDSIMMISYMVDKQGYLIINRECVGDDIEDLEFTPKPEFEGCFKVTNVQNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRAAHHGFKMSDELGFQCDMNQGECRAKFAPHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPEEVNPEDMVRFAKEKPQMMASYSVSDAVSTYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQSYKANVICPNKHQSDAEKFYKNHLLESETYIGGHVECLESGVFRSDIPCSFTLEPSAFEQLINNLDRDLQYAIRVEGKMDLDSVSNYDEVKNSILEKLVKLRDAPIRDECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEICTACDFNRPGKTCLRKLEWVWRGSTFTAKKSDYYHLKKQIESEFVDGTNERSSKSFLDLPKAEQQIRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTIDSKRKLTISYPCVMLNVDVAINNTNDQYQTLTDPNRKTYTTHSECSIEFEVDGPYKAMIIPASKEEGILIKKRYAVFNDDGSLAELKGFEIKRRGELKLIKVFQAELFENFLHGSTLKECYSEVAFVANRWLDLLDNQGQDIADSELLDYISESSTMSKSLADYGQQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFQTDAEVMKFYVRKWCKVSSDVGIRSIIDWSYYKQRLGSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKIDDTFKSMNKNESSKKNNDSNGMEDEIVNDMEDFGNRGRNSTSGPRPIIRHYKANNEQHSEKFNGHEDSEQQHIGSSNINQSLSLSQQDEICENVDRIVDYQGWLQIKKRKWKSILGKRKKQRLENSKRSDHLNGSLEQTNGKMNHGKTNVSSYFRRQEVVLTRCHWQIIQLVQSSQVGQFFAWVVVDGIMLKIPISVPRVFYLNSRSQNEEFSCKRVNKTLPHGRHSYNLYEVTINEEQYKEESKKLAALLADPDVEGIYETKVPLDFNAIVQLGCVCKVDKTAKKRSLQEPWNLSELHMKTTTECAYLEQSISFFYLYHSISEGRAIYVGYFPGSQAITFVVVNPYQNKDLSPIFLERQFRDACRALSIEPPLRNDINFKVEYVALVKDAETVMQSAINDHRSEHHGPMVAVIECPDVQLLKLGIRALDDFPCLTIPSNARDSQYQILGWQQVAAKLGMQRCAASVQWLNERIALSRYAHVPLGNFEFDWLMFTVDTFFSRALRDNQQVLWISDDGFPDLGGNNGEENCFLDEVHQSVCTFPGAYRKITVEIKIHHLAVDALLKCNQVNEMEGGALLGLDHEFDSEAFPVNGQNGFDESTSCKHAFRVLKHLIQRCLSDAVTSGNVFADAILQHLYRWLCSPQSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLSTAKAYCDSLLRTIQSRDLFEWIELEQLQFWCSLLFMDQYNYGGIPAKSDEAMDDESQVDIISSWNIAEYLPKKIQDHYVFIVSQFMYIPWNYARKQAAIRASVLSGDSCTPSINIGAAEAFESEITEYIKEQISSYFTDKLLGVVRDIVLHMKGMGRSENDPSTSSGLPQLADDLHRGDAALEFIKHVCAVLALDQSVQHDVHVMRKNLLKYVRVREFAPEAEFHDPCHSFTLPNVICSYCNDCRDLDLCRDPTLLTEEWHCAVPQCGQPYDREVMENALLQIARQRERQYHLQDLVCVRCNQVKAAHLAEQCACAGSFKCKEDATEFRKKMLVIFNIASRQKFQLLQECTSWMSELNI 2207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01400 2207 SMART polmehr3 239 842 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tsu06g01400 2207 MobiDBLite consensus disorder prediction 1284 1298 - -
Tsu06g01400 2207 Gene3D Palm domain of DNA polymerase 753 937 IPR023211 -
Tsu06g01400 2207 MobiDBLite consensus disorder prediction 1142 1176 - -
Tsu06g01400 2207 SUPERFAMILY DNA/RNA polymerases 486 1115 IPR043502 -
Tsu06g01400 2207 Gene3D - 941 1125 IPR042087 -
Tsu06g01400 2207 Pfam DNA polymerase family B, exonuclease domain 74 400 IPR006133 -
Tsu06g01400 2207 MobiDBLite consensus disorder prediction 1142 1174 - -
Tsu06g01400 2207 Pfam Domain of unknown function (DUF1744) 1526 1892 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Tsu06g01400 2207 Gene3D DNA Polymerase, chain B, domain 1 52 228 - -
Tsu06g01400 2207 MobiDBLite consensus disorder prediction 1269 1298 - -
Tsu06g01400 2207 Gene3D - 238 468 IPR036397 GO:0003676
Tsu06g01400 2207 CDD DNA_polB_epsilon_exo 240 443 - -
Tsu06g01400 2207 CDD POLBc_epsilon 503 1122 - -
Tsu06g01400 2207 SUPERFAMILY Ribonuclease H-like 58 467 IPR012337 -
Tsu06g01400 2207 Pfam DNA polymerase family B 753 1064 IPR006134 GO:0000166|GO:0003677
Tsu06g01400 2207 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 32 2203 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Tsu06g01400 2207 SMART DUF1744_2 1508 1892 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01400 5 2202 Core DNA Replication Machinery Family AT2G27120 67.697 0.0 3026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01400 K02324 - gmx:100812003 3793.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01400 06 13429168 13453527 Tsu06g01400 06 13429168 13453527 ECH