Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01371 ATGTACAGTAATTTCAAGGAGCAAGGAATAGATTACGCGAAACAAGCTGTACAAGAGGATAATGCAGGAAACTACGCAAAAGCGTTTTCATTATACATGAACGCGTTAGAGTATTTCAAAACGCATCTCAAGTATgagaaaaaccctaaaatcaaagAAACTATTACTCAGAGATTTACTGATTATCTTCGTCGTGCTGAGGAGATCCGTGCTGTGCTTGATGGTGGTGGACCAGGACCTGCTTCTAATGGAGATGCTGCTGTTGCGACGAAGCCAAAAACTAAGCCGAAGAATGGTGGCGAGGGAGATGGAGAGGATCCTGAGCAGAGTAAGTTGAGAGCTGGATTGAATTCGGCGATTGTGAGGGAGAAACCAAATGTGAAGTGGAATGATGTTGCTGGGTTGGAAAGTGCTAAGCAATCGTTGCAGGAAGCGGTTATCTTGCCTGTGAAGTTTCCTCAGTTTTTTACAGGTAAAAGACGACCTTGGAGGGCATTTTTGTTGTACGGACCACCTGGAACAGGTAAATCATACTTGGCCAAGGCTGTTGCAACTGAAGCTGATTCTACATTTTTCAGTGTTTCTTCATCGGACCTCGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTTGAAATGGCTCGCGAAAGTGCACCTTCCATCATATTTGTTGATGAAATAGATTCTCTATGTGGTACGCGTGGAGAAGGCAATGAGAGTGAGGCTTCAAGGCGAATTAAAACTGAACTTCTGGTGCAGATGCAGGGTGTTGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCTTATGCTCTAGACCagGCAATAAGGCGACGTTTTGATAAGCGTATATACATTCCACTGCCAGATTTGAAGGCTCGCCAACACATGTTCAAGGTCCATCTAGGAGATACTCCCCATAATTTGACTGAAAGTGATTTTGAACACTTGGCTTACAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTGTGAAGGATGTTTTATTTGAACCTGTTCGTAAAACCCAAGATGCCATGTTTTTCTTTAAGGATCCGGAAGGTATGTGGATACCATGTGGACAGAAGCAACAAAATGCAGTACAAATTACAATGACAGATCTTGCCACACAGGGACTTGCTTCAAAGATCCTCCCACCACCTATATCAAGAATCGATTTCGACAAAGTACTTGCTAGACAAAGGCCTACAGTAAGCAAATCGGACCTTGATGTTCATGAGAGATTCACAAAGGAGTTCGGAGAGGAAGATTTTTTGATTGTGAACAATCTGTTAACAAAAAATGCTTGTAAGTTGTCCAAAACCTTGTTTGTACCTGTGAGGAAATGCTCGGTGTTGGCAGAGTTAGAGGATATGAACACTGTTGGGCTGCACTTTCAGcattatataatttatatggGAGATCATTCACACCCTAATTCAGAGTCTGTCATCAGAGCAAACCATGAGATACTAGCTTCAGTCACAGGAAGTCTCAGTGATGCAAAGGAAATAGCACTACACCATTATAGTAAAAGCTTTCGAGGCTTTTCGGCTATGATTACGCCAGAACAAGCTAATAAGCTTGCAGAATATGATTCAGTTGTGTCGGTTTTTGAGAGCAAAATGAATATGCTCCACACTACACATTCTTGGGATTTTCTTAGATTAGACTCAGTCTACAAGAGCAATCATATAGCTCTAGACTCCACATCCAATGTCATTGTTGGTGTCATTGACTCAGGGGTGTGGCCGGAATCGGAAAGCTTCAATGATTATGGATTAGGTCCTGTGCCTGAGAAATTCAAGGGAGAGTGTGTTACTGGTGATAATTTTACACTTGCTAATTGCAACAAGAAAATTATCGGTGCACGATTCTATTCAAAAGGGATTGAAGCAGAAAATGGTCCTCTAAAAGACGTCAACAAGATTTTCTTCAGGTCAGCTAGAGACAGTGATGGACATGGAACACACACAGCTTCAACAATTGCAGGATCCATTGTAGATAATGCTAGCTTATTTGGCATTGCCAAAGGTACAGCTAGAGGCGGTGCTCCAAGTGCAAGACTAGCTATCTACAAGGCTTGTTGGTTTGGACTTTGCAGTGATGCTGATGTTCTTTCTGCTATGGATGATGCCATTCATGACGGTGTTGACatactttctctttctcttgGTCCTTTTCCTCCACAGCCGAGTTACTTTGAGAACGCAATCAGTGTTGGAGCATTCCATGCATTCCAAAAGGGAATTCTTGTTTCTGCTTCAGCTGGAAACTCGGTTTTTCCTCGTACTGCAACCAACGTTGCTCCTTGGATCCTCACTGTTGCTGCTAGTACAATAGACAGAGAATTCAGATCAGATATCTACCTTGGTAACTCAAAAGTTTTGAagGGTCTTTCTCTGAATCCAATAAAAATGGAGGGTTATCATGGTTTGATATATGGAAGTGCAGCTGCAGCTTATGGAGTTCCAGCAACAAATGCTAGCTTCTGCAAGAACAATACTCTAGACCCTAACTTAATCAATGGAAAAATTGTTATCTGCACAATAGAAAAATTCACCgacaaaagagaagaaaaatccATAATAGTAAGGCAAGGTGGCGGTGTTGGAATGATACTTATTGACCATAATGCCAAAGAAGTTGGTTTTCAGTTTGTTATTCCAGCCACTCTTATTGGTCAGGATGCTGTAGAAGAGCTTCAAGCATACATAAACACAGATAAGAATCCTATTGCTAAAATCTTTCCAACAGTAACTGTTGTTGGTACTAAACCTGCTCCAGAAGCTGCAGCTTTCTCTTCCATGGGGCCAAATATAATAACACCAGATATTATTAAGGCAAGTTTACGCACCCCTGACATCACAGGACCTGGAGTGAATATTTTGGCAGCATGGTCTCCAGTGGCTACTGAATCCACAGTTGAACAACAATCTGTCAACTATAACATCATTTCAGGAACATCGATGTCTTGTCCGCACATATCCGCAGTTGCAGCAATTATCAAATCTTACAACCCATCCTGGACTCCTGCAGCCATAATGTCAGCCATAATGACAACAGCAACAGTACTGGATAACACAAACCATCTCATAGGAAGAGATCCAAATGGAACTCAAACCACTCCATTCGACTACGGCTCCGGACACATCAATCCACTTGCATCACTCAATCCCGGATTAGTATACGATTTTAGTTCACAAGATGCTCTCAATTTTCTCTGCAGCAATGGAGCAAGCCCATCACAGCTTAAAAACATCACTGGCGAACTCACTCAATGTCAGAAATATCCTACACCTTCCTACAACTTCAATTACCCTTCAATTGGTGTATCCATCTTGAATGGAAGTTTATGTGTTTATCGAACCGTTACATACTATGGTCATGAACCAGCAGTGTATGTTGCAAGTGTTGAAAATCCATCTGGTGTGAAAGTTACCGTTACGCCGGTGGAACTGAAGTTCTGGAAAATAGGAGAGAAGTTAACTTTTAGGATTGATATCACCCCTTTCATGAAAAGCAATGGAAACTTTGTGTTTGGTGCCTTGACATGGAAGAATGGTAGACAAAGGGTTAGGAGTCCTATTGGTGTTAATGTAGTATCTATATAA 3642 0.4086 MYSNFKEQGIDYAKQAVQEDNAGNYAKAFSLYMNALEYFKTHLKYEKNPKIKETITQRFTDYLRRAEEIRAVLDGGGPGPASNGDAAVATKPKTKPKNGGEGDGEDPEQSKLRAGLNSAIVREKPNVKWNDVAGLESAKQSLQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCGTRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLAYKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKDPEGMWIPCGQKQQNAVQITMTDLATQGLASKILPPPISRIDFDKVLARQRPTVSKSDLDVHERFTKEFGEEDFLIVNNLLTKNACKLSKTLFVPVRKCSVLAELEDMNTVGLHFQHYIIYMGDHSHPNSESVIRANHEILASVTGSLSDAKEIALHHYSKSFRGFSAMITPEQANKLAEYDSVVSVFESKMNMLHTTHSWDFLRLDSVYKSNHIALDSTSNVIVGVIDSGVWPESESFNDYGLGPVPEKFKGECVTGDNFTLANCNKKIIGARFYSKGIEAENGPLKDVNKIFFRSARDSDGHGTHTASTIAGSIVDNASLFGIAKGTARGGAPSARLAIYKACWFGLCSDADVLSAMDDAIHDGVDILSLSLGPFPPQPSYFENAISVGAFHAFQKGILVSASAGNSVFPRTATNVAPWILTVAASTIDREFRSDIYLGNSKVLKGLSLNPIKMEGYHGLIYGSAAAAYGVPATNASFCKNNTLDPNLINGKIVICTIEKFTDKREEKSIIVRQGGGVGMILIDHNAKEVGFQFVIPATLIGQDAVEELQAYINTDKNPIAKIFPTVTVVGTKPAPEAAAFSSMGPNIITPDIIKASLRTPDITGPGVNILAAWSPVATESTVEQQSVNYNIISGTSMSCPHISAVAAIIKSYNPSWTPAAIMSAIMTTATVLDNTNHLIGRDPNGTQTTPFDYGSGHINPLASLNPGLVYDFSSQDALNFLCSNGASPSQLKNITGELTQCQKYPTPSYNFNYPSIGVSILNGSLCVYRTVTYYGHEPAVYVASVENPSGVKVTVTPVELKFWKIGEKLTFRIDITPFMKSNGNFVFGALTWKNGRQRVRSPIGVNVVSI 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01371 1213 ProSiteProfiles Serine proteases, subtilase domain profile. 560 1067 - -
Tsu06g01371 1213 Pfam Vps4 C terminal oligomerisation domain 366 430 IPR015415 -
Tsu06g01371 1213 PRINTS Subtilisin serine protease family (S8) signature 660 673 IPR015500 -
Tsu06g01371 1213 PRINTS Subtilisin serine protease family (S8) signature 580 599 IPR015500 -
Tsu06g01371 1213 PRINTS Subtilisin serine protease family (S8) signature 996 1012 IPR015500 -
Tsu06g01371 1213 MobiDBLite consensus disorder prediction 73 110 - -
Tsu06g01371 1213 MobiDBLite consensus disorder prediction 96 110 - -
Tsu06g01371 1213 CDD Peptidases_S8_3 555 1033 IPR034197 -
Tsu06g01371 1213 PANTHER AAA DOMAIN-CONTAINING 1 432 - -
Tsu06g01371 1213 Gene3D - 791 932 - -
Tsu06g01371 1213 Pfam ATPase family associated with various cellular activities (AAA) 167 296 IPR003959 GO:0005524|GO:0016887
Tsu06g01371 1213 Gene3D - 125 421 IPR027417 -
Tsu06g01371 1213 SMART smart 2 79 IPR007330 -
Tsu06g01371 1213 Pfam PA domain 838 911 IPR003137 -
Tsu06g01371 1213 SUPERFAMILY MIT domain 2 80 IPR036181 -
Tsu06g01371 1213 ProSitePatterns AAA-protein family signature. 268 287 IPR003960 GO:0005524|GO:0016887
Tsu06g01371 1213 Pfam Subtilase family 581 1039 IPR000209 GO:0006508|GO:0008236
Tsu06g01371 1213 Gene3D Peptidase S8/S53 domain 582 1079 IPR036852 GO:0004252|GO:0006508
Tsu06g01371 1213 Pfam Peptidase inhibitor I9 477 551 IPR010259 -
Tsu06g01371 1213 CDD AAA 133 296 - -
Tsu06g01371 1213 Gene3D - 298 413 - -
Tsu06g01371 1213 Pfam Fibronectin type-III domain 1113 1208 IPR041469 -
Tsu06g01371 1213 Gene3D - 1084 1211 - -
Tsu06g01371 1213 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 432 - -
Tsu06g01371 1213 ProSitePatterns Serine proteases, subtilase family, serine active site. 997 1007 IPR023828 -
Tsu06g01371 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 429 IPR027417 -
Tsu06g01371 1213 CDD PA_subtilisin_like 797 925 - -
Tsu06g01371 1213 SUPERFAMILY Subtilisin-like 555 1071 IPR036852 GO:0004252|GO:0006508
Tsu06g01371 1213 CDD MIT_VPS4 4 74 IPR045253 -
Tsu06g01371 1213 Pfam MIT (microtubule interacting and transport) domain 8 70 IPR007330 -
Tsu06g01371 1213 SMART AAA_5 162 298 IPR003593 -
Tsu06g01371 1213 Gene3D - 6 74 - -
Tsu06g01371 1213 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 468 556 IPR037045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01371 Tsu-Chr6 12854020 12865670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01371 478 1210 Subtilisin-like Serine Gene Family AT2G04160 42.764 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01371 - - gmx:100792672 1222.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04704 02 56168335 56172627 Tsu06g01371 06 12854020 12865670 PCT