Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01357 ATGGCTATGATGGAGTTTGATATAGAAGACAATAATTTCATTGAGTGGCTTAAACCATCTAGTCCCTCTCTTTCATATctaacttcatcatcatcaacatcttcttcttctacaaCTCAAAATGAAACTATTCAATTCTTTCCTATTTTGAGTGAAAATTCTTCAAAAGAGGAAGAACATGAAGTACCACAAATTAAGGGTTTTGATGTGGCTTTGCATATTGGATTACCTAGTGACACTAAAGAAAATGATGAGAAATTTTTCCATgctaaagaaaaagaaaaaccttCTAAGAAAACCTTCCAAAGGTTTTGGATACCAACTTCTGCACAAATCCTTGTTGGACCTATGCAGTTTTCTTGCTCCATATGCAACAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCTGAATTTAGAAAAGGACCAGACTCACTTAGAGGAACACAACCAGCTGCAATGCTAAGGTTACCTTGCTATTGTTGTGCTCAAGGTTGTAAGAACAATATCAATCATCCAAGAGCTAAACCTTTGAAAGATTTTAGAACACTTCAAACTCACTACAAAAGAAAACATGGTACAAAACCATTTATGTGTAGAAAATGTGGGAAAACTTTTGCTGTTAAAGGTGATTGGAGGACTCATGAAAAGAATTGTGGTAAGTTATGGTATTGCACTTGTGGTTCAGATTTTAAACACAAAAGATCTCTTAAAGATCATATTCGATCTTTCGGAAAAGGCCATAATCGACTTCCGAGTCTTGATGATCGAGCTTTTGAGGAGGAGAAGGAATGTGTTACTTGTTCGGATGAAAATGAAGTTGCTCGTATATGA 852 0.3357 MAMMEFDIEDNNFIEWLKPSSPSLSYLTSSSSTSSSSTTQNETIQFFPILSENSSKEEEHEVPQIKGFDVALHIGLPSDTKENDEKFFHAKEKEKPSKKTFQRFWIPTSAQILVGPMQFSCSICNKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNRLPSLDDRAFEEEKECVTCSDENEVARI 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01357 283 Pfam Zinc finger, C2H2 type 119 138 IPR013087 -
Tsu06g01357 283 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Tsu06g01357 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Tsu06g01357 283 PANTHER ZINC FINGER PROTEIN WIP2 40 279 IPR043584 GO:0003700|GO:0010468
Tsu06g01357 283 SUPERFAMILY beta-beta-alpha zinc fingers 189 223 IPR036236 -
Tsu06g01357 283 SMART c2h2final6 119 141 IPR013087 -
Tsu06g01357 283 SMART c2h2final6 166 198 IPR013087 -
Tsu06g01357 283 SMART c2h2final6 203 223 IPR013087 -
Tsu06g01357 283 Gene3D Classic Zinc Finger 116 141 - -
Tsu06g01357 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 203 223 IPR013087 -
Tsu06g01357 283 Gene3D Classic Zinc Finger 199 257 - -
Tsu06g01357 283 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 40 279 - -
Tsu06g01357 283 SUPERFAMILY beta-beta-alpha zinc fingers 110 142 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01357 Tsu-Chr6 12763694 12766853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01357 6 273 C2H2 Transcription Factor Family AT1G08290 54.985 3.49e-112 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu06g01357 zf-C2H2_6 0.00017 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01357 - - gmx:100802773 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01357 06 12763694 12766853 Tsu06g01357 06 12763694 12766853 ECH
Tsu02g04706 02 56195609 56199087 Tsu06g01357 06 12763694 12766853 PCT