Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01347 ATGCCGAAGGGAAAGCCAAATTCTTCATCAGTTGCTAAACAGTCTGAGCCTGAAAAGCCAGTTGAGTCTGATGAGAAGGTTGACCTTGAAGAGGAAAATGATCCCGAGGAAGAAATGGAAGAAGAGGTTGAATATGAAGAAGTAGAAGAAGAGGAGGAAgtggaagaaattgaagaggAGGTGGAAGAAGAGGAGGATCCGGAGGAggtagaggaagaagaagaggaagaggaggaagaagagGTTGAAGAAGTGGAAGAAGATGATGCCACGGAAAACCACAGCATTGATGACGAGGAGAAGAAAAAGCATGCTGAACTTCTTTCTCTTCCTCCTCACAAGTCCGAAGTTTACATAGGTGGCATTCCTCTTGATGCGTTAACTGAAGATTTAAAAGAATTTTGTGAGCGTATTGGGGAAGTTGTACAGGTTAGAATAATGAAAGGAAAAGATTCTTCTGAGAATAAGGGATTTGCTTTCGTGACTTTTAGAAATGTAGAACTGGCTACTAAAGCCATCGAGGAGCTGAATAATACCATATTTAAGggtagaaaaataaaatgttctACATCTCAAGCCAAAAACCGTCTTTTTATTGGCAATATTCCTAGAAGCTGGGGCGAAAAAGACCTGAAGAAGGTTGTGACTGCGATTGGACCTGGAGTTACTGCTGTTGAACTAGTCAAGGATATGAAGAACATTAGCAATAACCGTGGCTTTGCTTTTATCGACTATCATAATAATGCATGTGCTGAATATTCAAAGCAAAAGATGACGAACCCAACATTTAAGCTTGGTGACAATTCCCCAACAGTGAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCTTCATCTCAGGTAAAGGCAGTATATGTGAAGAACCTTCCTAAGAATGTAACTCAAGAGCAGTTGAAAAAGCTTTTTGAACACCATGGGAAGATCACCAAGGTGGTTCTTCCACCACCAAAATCTGGTCAGGAAAAGAACAGAATTGGCTTTGTGCATTTTGCAGAGAGATCAAATGCTATGAAAGCACTAAAAAACACTGAAAGATATGAGTTAGAAGGTCAAATGTTAGAGTGTTCTCTAGCAAAGCCGCAGGCTGATCAGAAGGCTGGAGTATCAAATACACAGAATCAAGGATTGCTTCCAAGTTATCCGCCACATGTTGGTTACGGTTTGGTCGGGAATCCCTATGGTGCACTCGGTGCAGGATTTGGTGCTCCTGGTCTTGCACAGCCTTTGATGTATGGACCCGGTCAAACTCCCGCGGGAATGGCCATGATGCCAATGCTTCTGGCTGATGGACGCATTGGATATGTATTGCAACAACCAGGATTGCAGCCGCACACCCCGCCTTCGCATCAAAGAGGCGGAAGGAATGATAGTGGTGGGGGTGGGAGTGGTGGTGGCAGCAGGAATCCGGGCAGTTCAAGTAAGGGGAGACATAGCAATGATAGTGGTCAAGGGCGCAGATACCGCCCGTATTAG 1494 0.421 MPKGKPNSSSVAKQSEPEKPVESDEKVDLEEENDPEEEMEEEVEYEEVEEEEEVEEIEEEVEEEEDPEEVEEEEEEEEEEEVEEVEEDDATENHSIDDEEKKKHAELLSLPPHKSEVYIGGIPLDALTEDLKEFCERIGEVVQVRIMKGKDSSENKGFAFVTFRNVELATKAIEELNNTIFKGRKIKCSTSQAKNRLFIGNIPRSWGEKDLKKVVTAIGPGVTAVELVKDMKNISNNRGFAFIDYHNNACAEYSKQKMTNPTFKLGDNSPTVSWADPKNADSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQMLECSLAKPQADQKAGVSNTQNQGLLPSYPPHVGYGLVGNPYGALGAGFGAPGLAQPLMYGPGQTPAGMAMMPMLLADGRIGYVLQQPGLQPHTPPSHQRGGRNDSGGGGSGGGSRNPGSSSKGRHSNDSGQGRRYRPY 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01347 497 Gene3D - 277 387 IPR012677 -
Tsu06g01347 497 MobiDBLite consensus disorder prediction 468 485 - -
Tsu06g01347 497 SMART rrm1_1 116 189 IPR000504 GO:0003723
Tsu06g01347 497 SMART rrm1_1 196 273 IPR000504 GO:0003723
Tsu06g01347 497 SMART rrm1_1 290 363 IPR000504 GO:0003723
Tsu06g01347 497 SUPERFAMILY RNA-binding domain, RBD 115 281 IPR035979 GO:0003676
Tsu06g01347 497 MobiDBLite consensus disorder prediction 27 94 - -
Tsu06g01347 497 Gene3D - 3 195 IPR012677 -
Tsu06g01347 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 277 IPR000504 GO:0003723
Tsu06g01347 497 MobiDBLite consensus disorder prediction 1 101 - -
Tsu06g01347 497 Coils Coil 36 88 - -
Tsu06g01347 497 CDD RRM_SF 117 189 - -
Tsu06g01347 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 358 IPR000504 GO:0003723
Tsu06g01347 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 263 IPR000504 GO:0003723
Tsu06g01347 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 187 IPR000504 GO:0003723
Tsu06g01347 497 SMART rrm2_1 290 363 IPR003954 GO:0003676
Tsu06g01347 497 SMART rrm2_1 116 189 IPR003954 GO:0003676
Tsu06g01347 497 Gene3D - 196 276 IPR012677 -
Tsu06g01347 497 MobiDBLite consensus disorder prediction 444 497 - -
Tsu06g01347 497 PANTHER RNA RECOGNITION MOTIF 1 467 - -
Tsu06g01347 497 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 467 - -
Tsu06g01347 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 367 IPR000504 GO:0003723
Tsu06g01347 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 193 IPR000504 GO:0003723
Tsu06g01347 497 SUPERFAMILY RNA-binding domain, RBD 284 386 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01347 Tsu-Chr6 12660383 12670240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01347 131 450 Eukaryotic Initiation Factors Gene Family AT4G34110 26.000 5.14e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01347 K13161 - gmx:100806658 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01347 06 12660383 12670240 Tsu06g01347 06 12660383 12670240 ECH