Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01334 atggaTGATCTCTTCTTCCCTCCTGGTTTTCGTTTCTTCCCTACAGAAGAAGAGCTTGTTAGCTTTTACCTAAACCATAAGCTACAAGGACAAACAAATTCTATAGATAGGGTTATTCCTGTCATTGACATCAATGGTGTAGAACCATGGAATCTCCCAACTCTTGCGGGAGAGCTTTGTCGCGAAGATAAAGAGCAATGGTTTTTCTTTTCGCCGGGGCAAGAAAGAGAAGCAAGGGGTGGGAGACCAAATAGAACAACTGCTTGTGGATATTGGAAGGCAACTGGTTCACCTGGTTATGTTTATTCTTCAGATAATAAAGTTATTGGGGTGAAGAAAACCATGGTTTTTTATAAAGGGAAAGCTCCTAGTGGAAAGAAAACTAAATGGAAGATGAATGAATACAGAGCCATTCAAGTTTCTAACCAATCAAACACTGCCACACCTCAGTTGAGACGAGAGTTCAGCTTGTGCCGAGTCTATGTGGTATCCGGAAGCTTTCGAGCATTTGATAGACGCCCATTAGAAAAGACAAGAGCTAATCAATTGCAGATTAATCATGAGATTAATCAAAATCCATTTAGTGCCAATCAAGCTACGCAAATGGATGCATCAAGTTCATTTGAAATTTCTCATCTTCACAATGCTCAATTGCAAGAGGATGTAGGAGGTTCAAATAGCACTAATTGGGATGTAAATAACAATGacaatgataatgatgttgATTTTCAAGAACCAATTTGGGAATGGGAATTTTAA 759 0.3808 MDDLFFPPGFRFFPTEEELVSFYLNHKLQGQTNSIDRVIPVIDINGVEPWNLPTLAGELCREDKEQWFFFSPGQEREARGGRPNRTTACGYWKATGSPGYVYSSDNKVIGVKKTMVFYKGKAPSGKKTKWKMNEYRAIQVSNQSNTATPQLRREFSLCRVYVVSGSFRAFDRRPLEKTRANQLQINHEINQNPFSANQATQMDASSSFEISHLHNAQLQEDVGGSNSTNWDVNNNDNDNDVDFQEPIWEWEF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01334 252 Gene3D NAC domain 15 166 IPR036093 GO:0003677|GO:0006355
Tsu06g01334 252 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 6 251 - -
Tsu06g01334 252 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Tsu06g01334 252 SUPERFAMILY NAC domain 4 162 IPR036093 GO:0003677|GO:0006355
Tsu06g01334 252 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 251 - -
Tsu06g01334 252 ProSiteProfiles NAC domain profile. 6 163 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01334 Tsu-Chr6 12568293 12570057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01334 9 251 NAC Transcription Factor Family AT5G22380 52.459 1.20e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu06g01334 NAM 2.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01334 - - cam:101497878 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01334 06 12568293 12570057 Tsu06g01334 06 12568293 12570057 ECH
Tsu02g04734 02 56493590 56495603 Tsu06g01334 06 12568293 12570057 PCT