Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01304 ATGTCGGCCAACCGAGCTCCTCCATCTACCGCCGACCACATCATGAAACGCCAACTCCCTTTCTCTTCCATGAAACCTCCTTTTGTAGCTTCCGGAGATTATCATCGCTTTGCCCCTGACCACCGCCGAAATCTCGACCACGAAACTGAAGCTATCGTCGTTAAGACTccgCCATTGAAGCGGAAAAGTGAAGCCGCTGATTTTGAAGCTGATTCAGGTGATAGAATGACTCCAGGATCCACTCAAGCAGCCAATAGTCATTTTCAGACGCCTGTATCTGGAAAGACGGGGAAGGGAGGCAAGTCCTCTAGGCTGACAAAAGGCAACAGATCTGGAACTCAAACCCCAGGCTCAAATATTGGTTCTCCTTCAGGAAACAATCTCACCCCTGCTGGTCCATGTCGATATGACAGTTCTTTAGgtcTGTTGACAAAAAAgttcataaatttaataaaacaagCGGAGGATGGTATTCTTGATCTAAATAATGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGTCTTATAGAGAAAAAGCTCAAGAACAGAATTCAGTGGAAGGGGCTGGATGTTTCAAAACCAGGGGAGGCTGATGATAGTTTTGCTAGTTTACAGGcggaaattgaaaatttaacaATGGAGGAACGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAAGCTACGGGATCTTAGTGAAGATGAAAATAGTGAgaaGTTGCTTTTTGTCACTGAGGATGATATAAAGAACTTGCCCTGCTTCCAGAATGAAACCTTGATAGCAATTAAAGCTCCACATGGAACCACTTTGGAAGTCCCTGATCCTGATGAGGCTGTTGATTATCCACAGAGGAGATACAGGATAGTCCTGAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAAAAGTTTGAGGAGATCAATGGTGTTGATGTTGCACCCAAAGTTCCATCCAGTCTAGAAGTTCATATGCATCAATCAACTGTGGTCCCAGAGGATAAAGGGAAGGAAATAGAAGTGCAGGCACAAGATGGTGAAGGGCCTAGTTCAGATCCTACCAACTCTCACGACTTCGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGATGCTGATTACTGGCTGTTATCAGATGCCAATGTTAGCTTAACCGATATGTGGAGAACAGAATCCGGAGTTGAATGGAATGAACTCGACGCACTTCAAGAAGATTTTTGTATTGCTCGTGAGCACACTACAACCCCAAATCATGATTCAAACATAGGTGAAGCGTCTTCTGCATCAAACCCTACTGTAGGATGA 1365 0.4264 MSANRAPPSTADHIMKRQLPFSSMKPPFVASGDYHRFAPDHRRNLDHETEAIVVKTPPLKRKSEAADFEADSGDRMTPGSTQAANSHFQTPVSGKTGKGGKSSRLTKGNRSGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNNAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSKPGEADDSFASLQAEIENLTMEERRLDEQIREMQEKLRDLSEDENSEKLLFVTEDDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVDVAPKVPSSLEVHMHQSTVVPEDKGKEIEVQAQDGEGPSSDPTNSHDFVSGIMKIVPSDVASDADYWLLSDANVSLTDMWRTESGVEWNELDALQEDFCIAREHTTTPNHDSNIGEASSASNPTVG 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01304 454 MobiDBLite consensus disorder prediction 55 132 - -
Tsu06g01304 454 Pfam E2F transcription factor CC-MB domain 216 316 IPR032198 GO:0046983
Tsu06g01304 454 MobiDBLite consensus disorder prediction 75 132 - -
Tsu06g01304 454 Coils Coil 213 254 - -
Tsu06g01304 454 MobiDBLite consensus disorder prediction 55 71 - -
Tsu06g01304 454 MobiDBLite consensus disorder prediction 433 454 - -
Tsu06g01304 454 Coils Coil 151 171 - -
Tsu06g01304 454 Gene3D - 129 202 IPR036388 -
Tsu06g01304 454 Gene3D - 207 317 - -
Tsu06g01304 454 CDD E2F_DD 211 317 IPR032198 GO:0046983
Tsu06g01304 454 Pfam E2F/DP family winged-helix DNA-binding domain 137 200 IPR003316 GO:0005667|GO:0006355
Tsu06g01304 454 PANTHER TRANSCRIPTION FACTOR E2F 13 443 IPR015633 GO:0000978|GO:0006357
Tsu06g01304 454 PANTHER TRANSCRIPTION FACTOR E2FB 13 443 - -
Tsu06g01304 454 SUPERFAMILY E2F-DP heterodimerization region 214 317 IPR037241 -
Tsu06g01304 454 SUPERFAMILY "Winged helix" DNA-binding domain 135 198 IPR036390 -
Tsu06g01304 454 SMART E2F_TDP_2 135 200 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01304 Tsu-Chr6 12301059 12306908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01304 16 427 E2F-DP Transcription Factor Family AT5G22220 58.810 1.01e-156 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Tsu06g01304 E2F_CC-MB 8.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01304 K06620 - gmx:100819817 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01304 06 12301059 12306908 Tsu06g01304 06 12301059 12306908 ECH